Center for Computational Sciences

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    325 Mcvey Hall; University of Kentucky; Lexington, KY 40506

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  • 2015

    Using visual analytics to inform rheumatoid arthritis patient choices

    Mihail, R. P., Jacobs, N., Goldsmith, J. & Lohr, K., Jan 1 2015, Serious Games Analytics: Methodologies for Performance Measurement, Assessment, and Improvement. p. 211-231 21 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    2 Scopus citations
  • 2014

    Computing Tolerance Intervals and Regions Using R

    Young, D. S., 2014, Handbook of Statistics. p. 309-338 30 p. (Handbook of Statistics; vol. 32).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    10 Scopus citations

  • Genomes of plant-associated clavicipitaceae

    Schardl, C. L., Young, C. A., Moore, N., Krom, N., Dupont, P. Y., Pan, J., Florea, S., Webb, J. S., Jaromczyk, J., Jaromczyk, J. W., Cox, M. P. & Farman, M. L., 2014, Advances in Botanical Research. p. 291-327 37 p. (Advances in Botanical Research; vol. 70).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    35 Scopus citations

  • Lung Stem and Progenitor Cells in Tissue Homeostasis and Disease

    Leeman, K. T., Fillmore, C. M. & Kim, C. F., 2014, Current Topics in Developmental Biology. p. 207-233 27 p. (Current Topics in Developmental Biology; vol. 107).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    Open Access
    64 Scopus citations

  • Modeling the electronic and optical processes in organic solar cells: Density functional theory and beyond

    Brédas, J. L., Coropceanu, V., Doiron, C., Fu, Y. T., Körzdörfer, T., Pandey, L., Risko, C., Sears, J., Yang, B., Yi, Y. & Zhang, C., Aug 31 2014, Organic Solar Cells: Fundamentals, Devices, and Upscaling. p. 537-588 52 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    2 Scopus citations

  • New insights into vertebrate skin regeneration

    Seifert, A. W. & Maden, M., 2014, International Review of Cell and Molecular Biology. p. 129-169 41 p. (International Review of Cell and Molecular Biology; vol. 310).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    60 Scopus citations

  • Small optical gap molecules and polymers: Using theory to design more efficient materials for organic photovoltaics

    Risko, C. & Brédas, J. L., 2014, Multiscale Modelling of Organic and Hybrid Photovoltaics. p. 1-38 38 p. (Topics in Current Chemistry; vol. 352).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    19 Scopus citations

  • The genomics of colletotrichum

    Crouch, J., O'Connell, R., Gan, P., Buiate, E., Torres, M. F., Beirn, L., Shirasu, K. & Vaillancourt, L., Jul 1 2014, Genomics of Plant-Associated Fungi: Monocot Pathogens. p. 69-102 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    65 Scopus citations

  • The locally corrected nyström method for electromagnetics

    Gedney, S. D. & Young, J. C., Jan 1 2014, Computational Electromagnetics: Recent Advances and Engineering Applications. p. 149-198 50 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    17 Scopus citations
  • 2013

    Cluster Analysis

    Padmanabhan, K., Harrison, B., Wilson, K., Warren, M. L., Bright, K., Mosiman, J., Kancherla, J., Phung, H., Miller, B. & Shamseldin, S., Jan 1 2013, Practical Graph Mining with R. p. 205-238 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Diverse Roles of CCCH Zinc Finger Proteins in Stress and Plant Development Responses

    Addepalli, B. & Hunt, A. G., Jan 2013, Zinc Fingers: Structure, Properties, and Applications. p. 123-142 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Frequent Subgraph Mining

    Harrison, B. E., Smith, J. C., Ware, S. G., Chen, H. W., Chen, W. & Khatri, A., Jan 1 2013, Practical Graph Mining with R. p. 167-204 38 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    1 Scopus citations

  • G protein-coupled receptors as target sites for insecticide discovery

    Bai, H. & Palli, S. R., Oct 1 2013, Advanced Technologies for Managing Insect Pests. p. 57-82 26 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    13 Scopus citations

  • Nanostructured surfaces for intracerebral neurotransmitter recording

    Price, D. A., Petrossians, A., Talauliker, P. M., Pomerleau, F., Huettl, P., Mansfeld, F., Weiland, J., Hastings, J. T. & Gerhardt, G. A., Jul 25 2013, The Textbook of Nanoneuroscience and Nanoneurosurgery. p. 231-241 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Nematodes

    Nielsen, M. K., Reinemeyer, C. R. & Sellon, D. C., Oct 2013, Equine Infectious Diseases: Second Edition. p. 475-489.e4

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    10 Scopus citations

  • The synthesis, regulation and modification of lignocellulosic biomass as a resource for biofuels and bioproducts

    Harris, D., Petti, C. & De Bolt, S., Jan 1 2013, Advanced Biofuels and Bioproducts. Vol. 9781461433484. p. 281-314 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    5 Scopus citations

  • Uncertain data: Representations, query processing, and applications

    Ge, T., Dekhtyar, A. & Goldsmith, J., 2013, Advances in Probabilistic Databases for Uncertain Information Management. p. 67-108 42 p. (Studies in Fuzziness and Soft Computing; vol. 304).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    3 Scopus citations

  • Vortex physics in the quantum hall bilayer

    Fertig, H. A. & Murthy, G., Jan 1 2013, 40 Years of Berezinskii-Kosterlitz-Thouless Theory. p. 325-348 24 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • 2012

    Insect Genomics

    Palli, S. R., Bai, H. & Wigginton, J., 2012, Insect Molecular Biology and Biochemistry. p. 1-29 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    1 Scopus citations

  • Recent Progress in Juvenile Hormone Analogs (JHA) Research

    Ramaseshadri, P., Farkaš, R. & Palli, S. R., 2012, Advances in Insect Physiology. p. 353-436 84 p. (Advances in Insect Physiology; vol. 43).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    40 Scopus citations

  • Skeletal muscle adaptation to exercise

    McCarthy, J. J. & Esser, K. A., 2012, Muscle. Vol. 2. p. 911-920 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    3 Scopus citations
  • 2011

    Bimolecular Fluorescence Complementation as a Tool to Study Interactions of Regulatory Proteins in Plant Protoplasts

    Pattanaik, S., Werkman, J. R. & Yuan, L., 2011, Plant Transcription Factors: Methods and Protocols. p. 185-193 9 p. (Methods in Molecular Biology; vol. 754).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    6 Scopus citations

  • Directed Evolution Through DNA Shuffling for the Improvement and Understanding of Genes and Promoters

    Werkman, J. R., Pattanaik, S. & Yuan, L., 2011, Plant Transcription Factors: Methods and Protocols. p. 325-342 18 p. (Methods in Molecular Biology; vol. 754).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    4 Scopus citations

  • Increased hydrogen production by genetic engineering of escherichia coli

    Fan, Z., Yuan, L. & Chatterjee, R., Apr 15 2011, Genetic Engineering: Recent Developments in Applications. p. 11-27 17 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Risk factors for chronic periodontal diseases

    Feitosa, D. D. S., Santamaria, M. P., Casati, M. Z., Sallum, E. A., Júnior, F. H. N. & Toledo, S. D., 2011, Periodontal Disease: Symptoms, Treatment and Prevention. p. 283-315 33 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    1 Scopus citations

  • Stein's Phenomenon

    Charnigo, R. & Srinivasan, C., Jan 1 2011, Philosophy of Statistics: Volume 7 in Handbook of the Philosophy of Science. Vol. 7. p. 1073-1098 26 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Targeted Cloning of Fungal Telomeres

    Farman, M. L., 2011, Methods in Molecular Biology. p. 11-31 21 p. (Methods in Molecular Biology; vol. 722).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    7 Scopus citations
  • 2010

    Constitutive equations and model validation

    Jhun, C. S., Wenk, J. F., Sun, K. & Guccione, J. M., 2010, Computational Cardiovascular Mechanics: Modeling and Applications in Heart Failure. p. 41-54 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    1 Scopus citations

  • Determination of myocardial material properties by optimization

    Wenk, J. F., Jhun, C. S., Sun, K., Stander, N. & Guccione, J. M., 2010, Computational Cardiovascular Mechanics: Modeling and Applications in Heart Failure. p. 55-72 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Genomics, Bioinformatics, and Computational Biology

    Kalbfleisch, T. S., Rempala, G. A. & Ramos, K. S., Aug 12 2010, Cellular and Molecular Toxicology. Vol. 2. p. 641-661 21 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    1 Scopus citations

  • In vivo left ventricular geometry and boundary conditions

    Wenk, J. F., Jhun, C. S., Zhang, Z., Sun, K., Burger, M., Einstein, D., Ratcliffe, M. & Guccione, J. M., 2010, Computational Cardiovascular Mechanics: Modeling and Applications in Heart Failure. p. 3-21 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    3 Scopus citations

  • In vivo myocardial material properties and stress distributions in normal and failing human hearts

    Wenk, J. F., Zhang, Z., Cheng, G., Sun, K., Walker, J. C., Saloner, D. A., Ratcliffe, M. B. & Guccione, J. M., 2010, Patient-Specific Modeling of the Cardiovascular System: Technology-Driven Personalized Medicine. p. 131-144 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Left ventricular implantation of biomaterials

    Wall, S. T., Wenk, J. F., Jhun, C. S. & Guccione, J. M., 2010, Computational Cardiovascular Mechanics: Modeling and Applications in Heart Failure. p. 227-238 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Risk factors for chronic Periodontal diseases

    Da Silva Feitosa, D., Santamaria, M. P., Casati, M. Z., Sallum, E. A., Nociti Júnior, F. H. & De Toledo, S., Jan 1 2010, Periodontitis: Symptoms, Treatment and Prevention. p. 1-33 33 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Site-directed mutagenesis and saturation mutagenesis for the functional study of transcription factors involved in plant secondary metabolite biosynthesis

    Pattanaik, S., Werkman, J. R., Kong, Q. & Yuan, L., 2010, Plant Secondary Metabolism Engineering: Methods and Applications. Fett-Neto, A. G. (ed.). p. 47-57 11 p. (Methods in Molecular Biology; vol. 643).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    17 Scopus citations

  • Surgical left ventricular remodeling procedures

    Wenk, J. F., Jhun, C. S., Sun, K., Ratcliffe, M. B. & Guccione, J. M., 2010, Computational Cardiovascular Mechanics: Modeling and Applications in Heart Failure. p. 197-210 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    1 Scopus citations
  • 2009

    Recent advances in the mode of action of juvenile hormones and their analogs

    Palli, S. R., 2009, Biorational Control of Arthropod Pests: Application and Resistance Management. p. 111-129 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    14 Scopus citations
  • 2008

    Messenger RNA 3′ end formation in plants

    Hunt, A. G., 2008, Human Cytomegalovirus. Reddy, A. & Golovkin, M. (eds.). p. 151-177 27 p. (Current Topics in Microbiology and Immunology; vol. 326).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    63 Scopus citations

  • Separating routing policy from mechanism in the network layer

    Dutta, R., Griffioen, J., Calvert, K. L., Ascigil, O. & Yuan, S., Jan 1 2008, Next-Generation Internet: Architectures and Protocols. Vol. 9780521113687. p. 216-237 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • The rice blast story: From genome sequence to function

    Dean, R. A., Mitchell, T., Kulkarni, R., Donofrio, N., Powell, A., Oh, Y. Y., Diener, S., Pan, H., Brown, D., Deng, J., Carbone, I., Ebbole, D. J., Thon, M., Farman, M. L., Orbach, M. J., Soderlund, C., Xu, J. R., Lee, Y. H., Talbot, N. J., Coughlan, S., & 2 othersGalagan, J. E. & Birren, B. W., Jan 1 2008, Exploitation of Fungi: Symposium of the British Mycological Society Held at the University of Manchester September 2005. p. 10-22 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • 2007

    Aspergillus nidulans linkage map and genome sequence: Closing gaps and adding telomeres

    John Clutterbuck, A. & Farman, M., Jan 1 2007, The Aspergilli: Genomics, Medical Aspects, Biotechnology, and Research Methods. p. 57-73 17 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    12 Scopus citations

  • Future insecticides targeting genes involved in the regulation of molting and metamorphosis

    Palli, S. R. & Cusson, M., 2007, Insecticides Design Using Advanced Technologies. Vol. 9783540469070. p. 105-134 30 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    12 Scopus citations

  • Induced π-Stacking in Acenes

    Anthony, J. E., Jan 16 2007, Functional Organic Materials: Syntheses, Strategies and Applications. p. 511-545 35 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    6 Scopus citations

  • Messenger RNA 3′-end formation and the regulation of gene expression

    Hunt, A. G., 2007, Regulation of Gene Expression in Plants: The Role of Transcript Structure and Processing. Vol. 9780387356402. p. 101-122 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    10 Scopus citations
  • 2006

    Engineered Pentacenes

    Anthony, J. E., Aug 28 2006, Organic Electronics: Materials, Manufacturing and Applications. p. 58-74 17 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    2 Scopus citations
  • 2005

    Ecdysteroid Receptors and their Applications in Agriculture and Medicine

    Palli, S. R., Hormann, R. E., Schlattner, U. & Lezzi, M., 2005, Insect Hormones. Litwack, G. (ed.). p. 59-100 42 p. (Vitamins and Hormones; vol. 73).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    82 Scopus citations
  • 2004

    Challenges in Implementing an ESP Service

    Calvert, K. L., Griffioen, J., Imam, N. & Li, J., 2004, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Wakamiya, N., Solarski, M. & Sterbenz, J. (eds.). p. 3-19 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2982).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    Open Access
    2 Scopus citations

  • Photoelectron Spectroscopy

    Yang, D. S., Jun 2004, Fundamentals: Physical Methods, Theoretical Analysis, and Case Studies. Vol. 2. p. 187-196 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    4 Scopus citations
  • 2001

    Molecular modifications of Baculoviruses for the control of forest insect pests

    Feng, Q., Arif, B. M., Palli, S. R., Sohi, S. S. & Retnakaran, A., 2001, Advances in Virus Research. p. 263-290 28 p. (Advances in Virus Research; vol. 57).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

    4 Scopus citations