Institute for Biomedical Informatics

Research output

Research output per year 1993 2017 2018 2021 2022 2023 2024 2025

• 21905 Citations
• 66 h-index
• 565 Article
• 102 Conference contribution
• 29 Review article
• 22 Preprint
• 80 More
  • 18 Meeting Abstract
  • 12 Conference article
  • 10 Letter
  • 9 Chapter
  • 9 Editorial
  • 8 Other contribution
  • 6 Paper
  • 6 Comment/debate
  • 1 Scientific review
  • 1 Short survey

Research output per year

Research output per year

Search results

• 2025

  Accuracy and Performance Characteristics of Administrative Codes for the Diagnosis of Autoinflammatory Syndromes: A Discovery and Validation Study

  Lee, S., Kim, S., Segerstrom, S., Ferguson, P. J. & Lenert, A., Mar 1 2025, In: Journal of Clinical Rheumatology. 31, 2, p. 60-64 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Autoinflammatory Disease 100%
  • Pustulosis 40%
  • Osteitis 40%
  • Hyperostosis 40%
  • Neonatal Onset Multisystem Inflammatory Disease 30%

• A maturity model for Clinical Trials Management Ecosystem

  Sehgal, S., Pua, E. C., Rojevsky, S., Becich, M. J., Fehrmann, J., Knosp, B. M., Wilcox, A., Talbert, J. C., Craven, C. K. & Starren, J., Jan 22 2025, In: Journal of Clinical and Translational Science. 9, 1, e28.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Product Management 100%
  • Clinical Trial 100%
  • Staff Interface 50%
  • Personnel Staff 50%
  • Organizational Personnel 50%

• Amyloid-β predominant Alzheimer's disease neuropathologic change

  Kovacs, G. G., Katsumata, Y., Wu, X., Aung, K. Z., Fardo, D. W., Forrest, S. L. & Nelson, P. T., Feb 1 2025, In: Brain. 148, 2, p. 401-407 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Amyloid Protein 100%
  • Genetics 50%
  • Tau 50%
  • In Vivo Study 50%
  • WNT3 50%
  2 Scopus citations

• Artesunate enhances the efficacy of enzalutamide in advanced prostate cancer

  Wang, X., Liu, J., Mao, F., Kong, Y., Zhang, Q., Li, C., He, D., Wang, C., Zhang, Y., Wang, R., Ellingson, S. R., Wei, Q., Li, Z. & Liu, X., May 2025, In: Journal of Biological Chemistry. 301, 5, 108458.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Enzalutamide 100%
  • Prostate Cancer 100%
  • Artesunate 100%
  • Androgen Receptor 28%
  • Drug Screening 14%

• Association of State Cannabis Legalization With Cannabis Use Disorder and Cannabis Poisoning

  Jayawardhana, J., Hou, J., Freeman, P. & Talbert, J. C., Mar 5 2025, In: JAMA Psychiatry. 82, 3, p. 228-236 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Cannabis 100%
  • Cannabis Use 100%
  • Diseases 100%
  • Toxic Injury 100%
  • Narcotic Drugs 100%
  2 Scopus citations

• Celebrating 40 years of the University of Kentucky Alzheimer's Disease Research Center

  Schmitt, F., Abner, E. L., Fardo, D. W., Gold, B., Jicha, G. A., Kryscio, R., Lee, D. C., Nelson, P. & Van Eldik, L. J., May 2025, In: Alzheimer's and Dementia. 21, 5, e70181.

  Research output: Contribution to journal › Review article › peer-review

  • Cognitive Aging 100%
  • Alzheimer's Disease 100%
  • Clinical Research 50%
  • Genetic Determinism 50%
  • Protein Misfolding 50%

• Clinical criteria for limbic-predominant age-related TDP-43 encephalopathy

  Wolk, D. A., Nelson, P. T., Apostolova, L., Arfanakis, K., Boyle, P. A., Carlsson, C. M., Corriveau-Lecavalier, N., Dacks, P., Dickerson, B. C., Domoto-Reilly, K., Dugger, B. N., Edelmayer, R., Fardo, D. W., Grothe, M. J., Hohman, T. J., Irwin, D. J., Jicha, G. A., Jones, D. T., Kawas, C. H. & Lee, E. B. & 17 others, Lincoln, K., Maestre, G. E., Mormino, E. C., Onyike, C. U., Petersen, R. C., Rabinovici, G. D., Rademakers, R., Raman, R., Rascovsky, K., Rissman, R. A., Rogalski, E., Scheltens, P., Sperling, R. A., Yang, H. S., Yu, L., Zetterberg, H. & Schneider, J. A., Jan 2025, In: Alzheimer's and Dementia. 21, 1, e14202.

  Research output: Contribution to journal › Article › peer-review

  • Brain Disease 100%
  • Transactive Response Dna Binding Protein-43 100%
  • Alzheimer's Disease 42%
  • Amyloid Protein 28%
  • Lacunar Amnesia 14%
  5 Scopus citations

• Clustering individuals using INMTD: A novel versatile multi-view embedding framework integrating omics and imaging data

  Li, Z., Windels, S. F. L., Malod-Dognin, N., Weinberg, S. M., Marazita, M. L., Walsh, S., Shriver, M. D., Fardo, D. W., Claes, P., Przulj, N. & Van Steen, K., Apr 1 2025, In: Bioinformatics. 41, 4, btaf122.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tamsulosin 100%
  • Genetics 50%
  • Adjusted Rand Index 50%
  • Internal Quality 50%
  • External Quality 50%

• Cognitive performance and differentiation of B-SNIP psychosis Biotypes: Algorithmic Diagnostics for Efficient Prescription of Treatments (ADEPT) - 2

  Clementz, B. A., Chattopadhyay, I., Hill, S. K., McDowell, J. E., Keedy, S. K., Parker, D. A., Trotti, R. L., Ivleva, E. I., Keshavan, M. S., Gershon, E. S., Pearlson, G. D., Tamminga, C. A. & Gibbons, R. D., Jun 2025, In: Biomarkers in Neuropsychiatry. 12, 100117.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Clinical Assessment 100%
  • Antisaccade 100%
  • Verbal Memory 33%
  • Antibody Directed Enzyme Prodrug Therapy 20%

• Comparison of the association between COVID-19 and new onset diabetes in a regional and national dataset

  Lacy, M. E., Smith, A. P., Hammerslag, L. R., Heier, K. R., Aaron, J., Fields, A., Fowlkes, J. L., Fisher, S. J., Talbert, J. & Kern, P. A., Jun 2025, In: Diabetes Research and Clinical Practice. 224, 112190.

  Research output: Contribution to journal › Article › peer-review

  • Hazard Ratio 100%
  • Large Data Set 100%
  • Database Data 100%
  • Infection 100%
  • Timeframe 50%

• Deep learning in single-cell and spatial transcriptomics data analysis: advances and challenges from a data science perspective

  Ge, S., Sun, S., Xu, H., Cheng, Q. & Ren, Z., Mar 1 2025, In: Briefings in Bioinformatics. 26, 2, bbaf136.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Single-Cell Sequencing 100%
  • Gene Expression Assay 100%
  • Gene Expression 100%
  • Metabolite 100%
  • Computational Method 100%
  2 Scopus citations

• Developing libraries of semantically-augmented graphics as visual standards for biomedical information systems

  Clarkson, M. D., Roggenkamp, S. & Detwiler, L. T., Mar 2025, In: Journal of Biomedical Informatics. 163, 104804.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Information Systems 100%
  • Web Application 33%
  • Ontology 33%
  • Data Management System 33%
  • Graph Database 33%

• Establishing a Variant Allele Frequency Cutoff for Manual Curation of Medical Exome Sequencing Data

  Sears, K., Hickey, C., Vincent, R., Stocks-Candelaria, J., Tate, J., Bumgardner, C., Zhang, S. & Miller, J. B., Jan 2025, In: Journal of Molecular Diagnostics. 27, 1, p. 36-41 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Exome Sequencing 100%
  • Gene Frequency 100%
  • Single-Nucleotide Polymorphism 60%
  • Exome 20%
  • Clinical Genomics 20%

• Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood

  Regeneron Genetics Center & NHLBI Trans-Omics for Precision Medicine Consortium, Feb 6 2025, In: American Journal of Human Genetics. 112, 2, p. 276-290 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Y Chromosome 100%
  • Mosaicism 100%
  • Genomics 100%
  • Whole Genome Sequencing 20%
  • Genetics 10%

• HEALing Communities Study: Data measures for supporting a community-based intervention to reduce opioid overdose deaths

  Slavova, S., Villani, J., Feaster, D. J., Booth, A., Holloway, J. N. L., Rock, P. J., Hammerslag, L. R., Mack, A., Knott, C. E., McCarthy, J. V., Talbert, J., LaRochelle, M. R., Freisthler, B., Gibbons, B. J., Patts, G., Bullard, M. J. & Walsh, S. L., Sep 1 2025, In: Drug and Alcohol Dependence. 274, 112738.

  Research output: Contribution to journal › Article › peer-review

  • Opioid Overdose 100%
  • Community-Based 100%
  • Community Study 100%
  • Mortality Rate 33%
  • Combination Therapy 33%

• Human interparietal bones: Examination of existing classification schemes and development of a graphic library depicting variations

  Clarkson, M. D., Dunn, R. R., Hefner, J. T., Long, H. A. & Spiros, M. C., 2025, (Accepted/In press) In: Anatomical Record.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Morphology 100%
  • Literature Reviews 100%
  • Ossification 100%
  • Bone Examination 100%
  • Classification Scheme 100%

• Identification of Naloxone in Emergency Medical Services Data Substantially Improves by Processing Unstructured Patient Care Narratives

  Harris, D. R., Rock, P., Anthony, N., Quesinberry, D. & Delcher, C., 2025, (Accepted/In press) In: Prehospital Emergency Care. 29, 4, p. 332-337 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Patient Care 100%
  • Triage 100%
  • Naloxone 100%
  • Narrative 25%
  • Language Processing 16%

• Identifying and responding to policy-related barriers, facilitators, and misunderstandings in the HEALing communities study: A community-driven approach

  Silwal, A., Bohler, R., Hunt, T., Olvera, R. G., Lofwall, M. R., Cook, C. D., Marks, K. R., Bridden, C., Freeman, P. R., Nouvong, M., Fanucchi, L. C., El-Bassel, N., Frazier, L. A., Walsh, S. L. & Talbert, J. C., May 22 2025, (E-pub ahead of print) In: International Journal of Drug Policy. 142, p. 104851

  Research output: Contribution to journal › Article › peer-review

  • Naloxone 100%
  • Diseases 100%
  • Evidence-Based 100%
  • Community Study 100%
  • Evidence-Based Practice 100%

• L858R/L718Q and L858R/L792H Mutations of EGFR Inducing Resistance Against Osimertinib by Forming Additional Hydrogen Bonds

  Imam, I. A., Al Adawi, S., Liu, X., Ellingson, S., Brainson, C. F., Moseley, H. N. B., Zinner, R., Zhang, S. & Shao, Q., Mar 2025, In: Proteins: Structure, Function and Bioinformatics. 93, 3, p. 673-683 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogen Bond 100%
  • Osimertinib 100%
  • Epidermal Growth Factor Receptor 100%
  • Drug Discovery 14%
  • Protein Binding 14%
  1 Scopus citations

• LATE-NC Stage 3: a diagnostic rubric to differentiate severe LATE-NC from FTLD-TDP

  Shahidehpour, R. K., Katsumata, Y., Dickson, D. W., Ghayal, N. B., Aung, K. Z., Wu, X., Phe, P., Jicha, G. A., Neltner, A. M., Archer, J. R. C., Corrada, M. M., Kawas, C. H., Ahmad Sajjadi, S., Woodworth, D. C., Bukhari, S. A., Montine, T. J., Fardo, D. W. & Nelson, P. T., Jun 2025, In: Acta Neuropathologica. 149, 1, 38.

  Research output: Contribution to journal › Article › peer-review

  • Brain Disease 100%
  • Transactive Response Dna Binding Protein-43 100%
  • Frontotemporal Lobar Degeneration 100%
  • TDP 43 Proteinopathy 28%
  • Middle Frontal Gyrus 19%

• Mapping medically relevant RNA isoform diversity in the aged human frontal cortex with deep long-read RNA-seq

  Aguzzoli Heberle, B., Brandon, J. A., Page, M. L., Nations, K. A., Dikobe, K. I., White, B. J., Gordon, L. A., Fox, G. A., Wadsworth, M. E., Doyle, P. H., Williams, B. A., Fox, E. J., Shantaraman, A., Ryten, M., Goodwin, S., Ghiban, E., Wappel, R., Mavruk-Eskipehlivan, S., Miller, J. B. & Seyfried, N. T. & 3 others, Nelson, P. T., Fryer, J. D. & Ebbert, M. T. W., Apr 2025, In: Nature Biotechnology. 43, 4, p. 635-646 12 p., 177.

  Research output: Contribution to journal › Article › peer-review

  • Frontal Lobe 100%
  • RNA-Seq 100%
  • RNA Isoform 100%
  • Isoform 100%
  • RNA 100%
  13 Scopus citations

• Methylome-proteome integration after late-life voluntary exercise training reveals regulation and target information for improved skeletal muscle health

  Chambers, T. L., Dimet-Wiley, A., Keeble, A. R., Haghani, A., Lo, W.-J., Kang, G., Brooke, R., Horvath, S., Fry, C. S., Watowich, S. J., Wen, Y. & Murach, K. A., Jan 2025, In: Journal of Physiology. 603, 1, p. 211-237 27 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylome 100%
  • Skeletal Muscle 100%
  • Exercise 100%
  • Proteome 100%
  • Epigenetics 71%

• Ramp Sequence May Explain Synonymous Variant Association with Alzheimer’s Disease in the Paired Immunoglobulin-like Type 2 Receptor Alpha (PILRA)

  Miller, J. B., Brandon, J. A., Harmon, L. M., Sabra, H. W., Lucido, C. C., Murcia, J. D. G., Nations, K. A., Payne, S. H., Ebbert, M. T. W., Kauwe, J. S. K. & Ridge, P. G., Mar 2025, In: Biomedicines. 13, 3, 739.

  Research output: Contribution to journal › Article › peer-review

  • Alzheimer's Disease 100%
  • Immunoglobulin 100%
  • Alpha Adrenergic Receptor 100%
  • Intravenous Immunoglobulin 100%
  • Messenger RNA 60%

• Result-scalability: Following the evolution of selected social impact of HPC

  Ellingson, S. & Pallez, G., 2025, (Accepted/In press) In: International Journal of High Performance Computing Applications.

  Research output: Contribution to journal › Article › peer-review

  • Metrics 100%
  • Pareto Front 25%

• RNApysoforms: fast rendering interactive visualization of RNA isoform structure and expression in Python

  Aguzzoli Heberle, B., Page, M. L., Gustavsson, E. K., Ryten, M. & Ebbert, M. T. W., 2025, In: Bioinformatics Advances. 5, 1, vbaf057.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Web Application 100%
  • Interactive Visualization 100%
  • Pattern Expression 100%
  • Expression Level 100%
  • Programmability 100%

• S6K1 is a Targetable Vulnerability in Tumors Exhibiting Plasticity and Therapy Resistance

  Ganguly, S., Burikhanov, R., Sviripa, V. M., Ellingson, S., Jiang, J., Gosser, C. M., Orren, D., Goellner, E. M., Shenoy, G. G., Rao, M., D’orazio, J., Brainson, C. F., Zhan, C. G., Spielmann, P. H., Watt, D. S. & Rangnekar, V. M., 2025, In: International Journal of Biological Sciences. 21, 2, p. 454-472 19 p.

  Research output: Contribution to journal › Article › peer-review

  • Caspase 2 100%

• Systematic review and meta-analysis of bulk RNAseq studies in human Alzheimer's disease brain tissue

  Aguzzoli Heberle, B., Fox, K. L., Lobraico Libermann, L., Ronchetti Martins Xavier, S., Tarnowski Dallarosa, G., Carolina Santos, R., Fardo, D. W., Wendt Viola, T. & Ebbert, M. T. W., Mar 2025, In: Alzheimer's and Dementia. 21, 3, e70025.

  Research output: Contribution to journal › Review article › peer-review

  • Brain Tissue 100%
  • RNA Sequence 100%
  • Meta-Analysis 100%
  • Alzheimer's Disease 100%
  • Bulk RNA Sequencing 100%
  1 Scopus citations

• TabMixer: advancing tabular data analysis with an enhanced MLP-mixer approach

  Eslamian, A. & Cheng, Q., Jun 2025, In: Pattern Analysis and Applications. 28, 2, 47.

  Research output: Contribution to journal › Article › peer-review

  • Transfer Learning 100%
  • Multilayer Perceptron 100%
  • Multilayer Neural Networks 100%
  • Supervised Learning 100%
  • Class Imbalance 66%

• The algebraic extended atom-type graph-based model for precise ligand–receptor binding affinity prediction

  Mukta, F. T., Rana, M. M., Meyer, A., Ellingson, S. & Nguyen, D. D., Dec 2025, In: Journal of Cheminformatics. 17, 1, 10.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiscale 100%
  • Similarities 100%
  • Learning System 100%
  • Ligand Structure 100%
  • Protein-Ligand Interaction 100%

• The effectiveness of the communities that HEAL intervention on reducing non-fatal opioid overdoses: A prespecified secondary analysis of a waitlist cluster control randomized controlled trial

  Gilbert, L., Chahine, R., Chandler, R., Feaster, D. J., Kim, E., Aldridge, A., Bagley, S., Balvanz, P., Fernandez, S., Rock, P., Vickers-Smith, R. A., Villani, J., Battaglia, T., Brown, J., Bush, H., Chase, R. P., Collins, T., D'Costa, L., Damato-MacPherson, C. & David, J. L. & 31 others, Defiore-Hyrmer, J., Freeman, P. R., Glasgow, L. S., Hammerslag, L. R., Hotchkiss, J., Hunt, T., Hussain, S., Kamanu, V., Knott, C., Knudsen, H. K., LaRochelle, M., Laudate, A., Lyons, M., McMullan, J., Nakayima, J., Schackman, B. R., Slavova, S., Tan, S., Vandergrift, N., Walters, S. T., Westgate, P. M., Wu, E., Young, A. M., Zarkin, G. A., Freisthler, B., Oga, E., Samet, J. H., Walsh, S. L., Winhusen, J., Jackson, R. & El-Bassel, N., Jun 2025, In: International Journal of Drug Policy. 140, 104798.

  Research output: Contribution to journal › Article › peer-review

  • Arm 100%
  • Population Size 100%
  • ICD-10-CM 100%
  • Head 100%
  • Randomized Controlled Trial 100%

• The impact of buprenorphine prescriber data on geospatial access to treatment in HEALing Communities Study communities, 2022

  Harris, D. R., Shrestha, S., Rock, P., Silwal, A., Barboza-Salerno, G., Lewis, O., Srinivasan, S. & Stopka, T. J., Jan 27 2025, (E-pub ahead of print) In: Journal of substance use and addiction treatment. 171, p. 209625

  Research output: Contribution to journal › Article › peer-review

  • Mental Health Service 100%
  • Community Study 100%
  • Data Source 100%
  • Mental Health 100%
  • Drainage Basins 40%
  1 Scopus citations

• The Role of Race/Ethnicity on the Association between Neighborhood Deprivation and Breast Cancer Outcomes among Kentucky Patients with Breast Cancer (2010–2022)

  Walker, B., Pollard, E., Howard, S. P., Jones, V. M., O’Connor, K. L., Durbin, E. B., Hull, P. C., Jones, S. R., Adegboyega, A., Wang, X., Owen, W. A. B., Szabunio, M. M., Williams, L. B. & Moore, J. X., Apr 1 2025, In: Cancer Epidemiology Biomarkers and Prevention. 34, 4, p. 474-482 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Breast Cancer 100%
  • Cancer Registry 18%
  • Cancer Mortality 18%
  • Tobacco Use 9%
  • Population Research 9%

• TSCMamba: Mamba meets multi-view learning for time series classification

  Ahamed, M. A. & Cheng, Q., Aug 2025, In: Information Fusion. 120, 103079.

  Research output: Contribution to journal › Article › peer-review

  • Multi-View Learning 100%
  1 Scopus citations
• 2024

  A Case Demonstration of the Open Health Natural Language Processing Toolkit From the National COVID-19 Cohort Collaborative and the Researching COVID to Enhance Recovery Programs for a Natural Language Processing System for COVID-19 or Postacute Sequelae of SARS CoV-2 Infection: Algorithm Development and Validation

  National COVID Cohort Collaborative, Sep 9 2024, In: JMIR Medical Informatics. 12, p. e49997

  Research output: Contribution to journal › Article › peer-review

  • Recovery Program 100%
  • Natural Language Processing 100%
  • Natural Language Processing Systems 100%
  • Algorithm Development 100%
  • Processing Algorithm 37%
  2 Scopus citations

• A digital twin of the infant microbiome to predict neurodevelopmental deficits

  Sizemore, N., Oliphant, K., Zheng, R., Martin, C. R., Claud, E. C. & Chattopadhyay, I., Apr 2024, In: Science advances. 10, 15, eadj0400.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Microbiome 100%
  • Dynamics 100%
  • Infant 100%
  • Brain 100%
  • 16S Ribosomal RNA 100%
  5 Scopus citations

• An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing

  Foran, D. J., Chen, W., Kurc, T., Gupta, R., Kaczmarzyk, J. R., Torre-Healy, L. A., Bremer, E., Ajjarapu, S., Do, N., Harris, G., Stroup, A., Durbin, E. & Saltz, J. H., Jan 1 2024, In: Cancer Informatics. 23

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Decision Support System 100%
  • Data Warehouse 100%
  • Hashing 100%
  • Learning System 100%
  • Machine Learning 100%

• Applying Machine Learning Models Derived From Administrative Claims Data to Predict Medication Nonadherence in Patients Self-Administering Biologic Medications for Inflammatory Bowel Disease

  Rhudy, C., Perry, C., Wesley, M., Fardo, D., Bumgardner, C., Hassan, S., Barrett, T. & Talbert, J., Jul 2024, In: Crohn's and Colitis 360. 6, 3, p. otae039

  Research output: Contribution to journal › Article › peer-review

  • Patient 100%
  • Drug Therapy 100%
  • Inflammatory Bowel Disease 100%
  • Learning 100%
  • Medical Record 100%

• Applying Machine Learning Models Derived From Administrative Claims Data to Predict Medication Nonadherence in Patients Self-Administering Biologic Medications for Inflammatory Bowel Disease

  Rhudy, C., Perry, C., Wesley, M., Fardo, D., Bumgardner, C., Hassan, S., Barrett, T. & Talbert, J., Jul 2024, In: Crohn's and Colitis 360. 6, 3, p. otae039

  Research output: Contribution to journal › Article › peer-review

  • Patient 100%
  • Drug Therapy 100%
  • Inflammatory Bowel Disease 100%
  • Learning 100%
  • Medical Record 100%

• Association between COVID-19 Infection and Incident Diabetes in Two Distinct Cohorts-A Nationwide Commercial Claims Database and a Regional Academic Medical Center

  Lacy, M., Smith, A., Hammerslag, L., Heier, K., Fields, A., Talbert, J., Fowlkes, J., Fisher, S. & Kern, P., Jun 2024, In: Diabetes. 73, 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

  • Association 100%
  • Diabetes 100%
  • Infection 100%
  • COVID-19 100%
  • Database 100%

• Association of clonal hematopoiesis and mosaic chromosomal alterations with solid malignancy incidence and mortality

  Desai, P., Zhou, Y., Grenet, J., Handelman, S. K., Crispino, C. M., Tarbay, L. N., Whitsel, E. A., Roboz, G., Barac, A., Honigberg, M., Bick, A., Anderson, G., Wactawski-Wende, J., Jakubek Swartzlander, Y. A., Bacon, J., Wong, J., Ma, X., Scheet, P., Li, Z. & Kasi, P. & 5 others, Prentice, R., Auer, P., Manson, J. A. E., Reiner, A. & Simon, M., Nov 15 2024, In: Cancer. 130, 22, p. 3879-3887 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Incidence 100%
  • Association 100%
  • Cancer 100%
  • Mortality 100%
  • Hematopoiesis 100%
  2 Scopus citations

• Association of State Cannabis Legalization With Cannabis Use Disorder and Cannabis Poisoning

  Jayawardhana, J., Hou, J., Freeman, P. & Talbert, J. C., Dec 23 2024, (E-pub ahead of print) In: JAMA Psychiatry.

  Research output: Contribution to journal › Article › peer-review

  • Intoxication 100%
  • Cannabis 100%
  • Cannabis Use 100%
  • Diseases 100%
  • Toxic Injury 100%

• Barriers to Buprenorphine Dispensing by Medicaid-Participating Community Retail Pharmacies

  Freeman, P. R., Hammerslag, L. R., Ahrens, K. A., Sharbaugh, M., Gordon, A. J., Austin, A. E., Donohue, J. M., Allen, L. D., Barnes, A. J. & Talbert, J. C., May 3 2024, In: JAMA Health Forum. 5, 5, p. e241077

  Research output: Contribution to journal › Article › peer-review

  • Buprenorphine 100%
  • Pharmacology 100%
  • Opiate 21%
  • Controlled Substance 13%
  • Narcotic Analgesic Agent 8%
  5 Scopus citations

• Combination of spironolactone and sitagliptin improves clinical outcomes of outpatients with COVID-19: a prospective cohort study

  Davarpanah, M. A., Adatorwovor, R., Mansoori, Y., Ramsheh, F. S. R., Parsa, A., Hajiani, M., Faramarzi, H., Kavuluru, R. & Asadipooya, K., Jan 2024, In: Journal of Endocrinological Investigation. 47, 1, p. 235-243 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Prospective Cohort Study 100%
  • Spironolactone 100%
  • Sitagliptin 100%
  • Combination Therapy 33%
  • Disease 33%
  4 Scopus citations

• Community-Based Cluster-Randomized Trial to Reduce Opioid Overdose Deaths

  Samet, J. H., El-Bassel, N., John Winhusen, T., Jackson, R. D., Oga, E. A., Chandler, R. K., Villani, J., Freisthler, B., Adams, J., Aldridge, A., Angerame, A., Babineau, D. C., Bagley, S. M., Baker, T. J., Balvanz, P., Barbosa, C., Barocas, J., Battaglia, T. A., Beard, D. D. & Beers, D. & 143 others, Blevins, D., Bove, N., Bridden, C., Brown, J. L., Bush, H. M., Bush, J. L., Caldwell, R., Calver, K., Calvert, D., Campbell, A. N. C., Carpenter, J., Caspar, R., Chassler, D., Chaya, J., Cheng, D. M., Cunningham, C. O., Dasgupta, A., David, J. L., Davis, A., Dean, T., Drainoni, M. L., Eggleston, B., Fanucchi, L. C., Feaster, D. J., Fernandez, S., Figueroa, W., Freedman, D. A., Freeman, P. R., Freiermuth, C. E., Friedlander, E., Gelberg, K. H., Gibson, E. B., Gilbert, L., Glasgow, L. S., Goddard-Eckrich, D. A., Gomori, S., Gruss, D. E., Gulley, J., Gutnick, D., Hall, M. E., Harger Dykes, N., Hargrove, S. L., Harlow, K., Harris, A., Harris, D., Helme, D. W., Holloway, J. N., Hotchkiss, J., Huang, T., Huerta, T. R., Hunt, T., Hyder, A., Ingram, V. L., Ingram, T., Kauffman, E., Kimball, J. L., Kinnard, E. N., Knott, C., Knudsen, H. K., Konstan, M. W., Kosakowski, S., Larochelle, M. R., Leaver, H. M., Lebaron, P. A., Lefebvre, R. C., Levin, F. R., Lewis, N., Lewis, N., Lofwall, M. R., Lounsbury, D. W., Luster, J. E., Lyons, M. S., Mack, A., Marks, K. R., Marquesano, S., Mauk, R., Mcalearney, A. S., Mcconnell, K., Mcgladrey, M. L., Mcmullan, J., Miles, J., Munoz Lopez, R., Nelson, A., Neufeld, J. L., Newman, L., Nguyen, T. Q., Nunes, E. V., Oller, D. A., Oser, C. B., Oyler, D. R., Pagnano, S., Parran, T. V., Powell, J., Powers, K., Ralston, W., Ramsey, K., Rapkin, B. D., Reynolds, J. G., Roberts, M. F., Robertson, W., Rock, P., Rodgers, E., Rodriguez, S., Rudorf, M., Ryan, S., Salsberry, P., Salvage, M., Sabounchi, N., Saucier, M., Savitzky, C., Schackman, B., Schady, E., Seiber, E. E., Shadwick, A., Shoben, A., Slater, M. D., Slavova, S., Speer, D., Sprunger, J., Starbird, L. E., Staton, M., Stein, M. D., Stevens-Watkins, D. J., Stopka, T. J., Sullivan, A., Surratt, H. L., Sword Cruz, R., Talbert, J. C., Taylor, J. L., Thompson, K. L., Vandergrift, N., Vickers-Smith, R. A., Vietze, D. J., Walker, D. M., Walley, A. Y., Walters, S. T., Weiss, R., Westgate, P. M., Wu, E., Young, A. M., Zarkin, G. A., Walsh, S. L. & The HEALing Communities Study Consortium, H. C. S. C., Sep 19 2024, In: New England Journal of Medicine. 391, 11, p. 989-1001 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Opioid Overdose 100%
  • Toxic Injury 100%
  • Cluster Randomized Trial 100%
  • Death 100%
  • Opiate 89%
  20 Scopus citations

• Coordinated Regulation of Myonuclear DNA Methylation, mRNA, and miRNA Levels Associates With the Metabolic Response to Rapid Synergist Ablation-Induced Skeletal Muscle Hypertrophy in Female Mice

  Ismaeel, A., Thomas, N. T., McCashland, M., Vechetti, I. J., Edman, S., Lanner, J. T., Figueiredo, V. C., Fry, C. S., McCarthy, J. J., Wen, Y., Murach, K. A. & von Walden, F., 2024, In: Function. 5, 1, p. zqad062

  Research output: Contribution to journal › Article › peer-review

  • Metabolic Pathway 100%
  • MicroRNA 100%
  • RNA 100%
  • Skeletal Muscle 100%
  • Regulatory Mechanism 100%

• COVID-19 Event Extraction from Twitter via Extractive Question Answering with Continuous Prompts

  Jiang, Y. & Kavuluru, R., Jan 25 2024, MEDINFO 2023 - The Future is Accessible: Proceedings of the 19th World Congress on Medical and Health Informatics. Bichel-Findlay, J., Otero, P., Scott, P. & Huesing, E. (eds.). IOS Press BV, p. 674-678 5 p. (Studies in Health Technology and Informatics; vol. 310).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Event Extraction 100%
  • Event 50%
  • Survey 25%
  • Benchmarking 25%
  • Language Modeling 25%
  1 Scopus citations

• Cross-View Diversity Embedded Consensus Learning for Multi-View Clustering

  Peng, C., Zhang, K., Chen, Y., Chen, C. & Cheng, Q., 2024, Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024. Larson, K. (ed.). p. 4788-4796 9 p. (IJCAI International Joint Conference on Artificial Intelligence).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Multi View Clustering 100%
  2 Scopus citations

• Deep learning uncertainty quantification for clinical text classification

  Peluso, A., Danciu, I., Yoon, H. J., Yusof, J. M., Bhattacharya, T., Spannaus, A., Schaefferkoetter, N., Durbin, E. B., Wu, X. C., Stroup, A., Doherty, J., Schwartz, S., Wiggins, C., Coyle, L., Penberthy, L., Tourassi, G. D. & Gao, S., Jan 2024, In: Journal of Biomedical Informatics. 149, 104576.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Classifier 100%
  • Text Classification 100%
  • Quantification 100%
  • Procedure 100%
  • Deep Learning Method 100%
  4 Scopus citations

• Determinants of mosaic chromosomal alteration fitness

  Pershad, Y., Mack, T., Poisner, H., Jakubek, Y. A., Stilp, A. M., Mitchell, B. D., Lewis, J. P., Boerwinkle, E., Loos, R. J. F., Chami, N., Wang, Z., Barnes, K., Pankratz, N., Fornage, M., Redline, S., Psaty, B. M., Bis, J. C., Shojaie, A., Silverman, E. K. & Cho, M. H. & 24 others, Yun, J. H., DeMeo, D., Levy, D., Johnson, A. D., Mathias, R. A., Taub, M. A., Arnett, D., North, K. E., Raffield, L. M., Carson, A. P., Doyle, M. F., Rich, S. S., Rotter, J. I., Guo, X., Cox, N. J., Roden, D. M., Franceschini, N., Desai, P., Reiner, A. P., Auer, P. L., Scheet, P. A., Jaiswal, S., Weinstock, J. S. & Bick, A. G., Dec 2024, In: Nature Communications. 15, 1, 3800.

  Research output: Contribution to journal › Article › peer-review

  • Fitness 100%
  • Chromosome Mosaicism 100%
  • Hematopoiesis 40%
  • Gene 40%
  • Janus Kinase 40%
  2 Scopus citations

• Development of message passing-based graph convolutional networks for classifying cancer pathology reports

  Yoon, H. J., Klasky, H. B., Blanchard, A., Christian, J. B., Durbin, E., Wu, X. C., Stroup, A., Doherty, J., Coyle, L., Penberthy, L. & Tourassi, G., Dec 2024, In: BMC Medical Informatics and Decision Making. 24, Suppl 5, 262.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Memory Consumption 100%
  • Node Embedding 100%