Personal profile
Research Interests
Dr. Ishanu Chattopadhyay’s research focuses on uncovering predictive structures in complex systems, leveraging a consistent set of core mathematical concepts to address diverse domains. His work aims to establish data-driven frameworks that yield actionable insights, spanning universal disease screening, pandemic forecasting, and societal modeling. Key areas of his research include:
- Healthcare and Predictive Screening: Through innovations like the Zero-burden Comorbid Risk score (ZCoR), Dr. Chattopadhyay develops advanced algorithms for screening complex diseases—such as autism and idiopathic pulmonary fibrosis—directly within EHRs. These tools enable universal screening, particularly valuable for identifying high-risk patients within low-risk populations, and are effective in reducing false-positive rates in autism diagnostics.
- Epidemic and Pandemic Modeling: Utilizing his data-smashing algorithm, Dr. Chattopadhyay forecasts epidemic case counts and identifies universal risk phenotypes, exemplified by the Universal Influenza-like Transmission (UnIT) score, which outperforms existing pandemic models, providing vital early warning capabilities.
- Rare and Extreme Event Prediction: Through frameworks like Fractal Net, Dr. Chattopadhyay explores complex systems to predict rare events, such as urban crime, while also examining broader societal impacts, including resource allocation biases in law enforcement.
- Digital Twins of Complex Systems (Q-Nets): His Q-Net framework addresses the modeling of various biological and ecological systems, including microbiomes and genomic interactions, enabling the analysis of intricate interdependencies and dynamic behavior within these systems.
- Emergent Dynamics in Societal Beliefs: In his CogNet framework, Dr. Chattopadhyay applies his digital twin approach to model societal polarization and opinion dynamics, aiming to predict and understand shifts in societal beliefs and polarization trends.
Dr. Chattopadhyay’s work emphasizes scalable, robust, and generalizable AI tools, with high-impact publications and collaborations with stakeholders such as DARPA, NIH, and leading academic institutions. His research advances data science across healthcare, social science, and ecosystem modeling, demonstrating a commitment to the transformative potential of predictive AI in scientific discovery.
Education/Academic qualification
Post Doctoral Fellow, Cornell University
2013
Post Doctoral Fellow, Pennsylvania State University
2008
Master of Arts, Pennsylvania State University
2006
Doctor of Philosophy, Pennsylvania State University
2006
Master of Science, Pennsylvania State University
2005
BS - Foreign Institution, Jadavpur University
2001
Keywords
- HA Statistics
- mathematical modeling
- Machine Learning (ML)
- Artificial Intelligence (AI)
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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SDG 16 Peace, Justice and Strong Institutions
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Collaborations and top research areas from the last five years
Projects & Grants
- 1 Active
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Large Science Models: Foundation Models for Generalizable Insights Into Complex Systems with Psycho-social Application
Chattopadhyay, I. (PI)
Defense Advanced Research Projects Agency
1/3/26 → 1/2/27
Project: Research project
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A digital twin of the infant microbiome to predict neurodevelopmental deficits
Sizemore, N., Oliphant, K., Zheng, R., Martin, C. R., Claud, E. C. & Chattopadhyay, I., Apr 2024, In: Science advances. 10, 15, eadj0400.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
The United States COVID-19 Forecast Hub dataset
US COVID-19 Forecast Hub Consortium, Dec 2022, In: Scientific data. 9, 1, 462.Research output: Contribution to journal › Article › peer-review
Open Access73 Scopus citations -
Screening for idiopathic pulmonary fibrosis using comorbidity signatures in electronic health records
Onishchenko, D., Marlowe, R. J., Ngufor, C. G., Faust, L. J., Limper, A. H., Hunninghake, G. M., Martinez, F. J. & Chattopadhyay, I., Oct 2022, In: Nature Medicine. 28, 10, p. 2107-2116 10 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
Event-level prediction of urban crime reveals a signature of enforcement bias in US cities
Rotaru, V., Huang, Y., Li, T., Evans, J. & Chattopadhyay, I., Aug 2022, In: Nature Human Behaviour. 6, 8, p. 1056-1068 13 p.Research output: Contribution to journal › Article › peer-review
Open Access27 Scopus citations -
Development of a computerized adaptive diagnostic screening tool for psychosis
Gibbons, R. D., Chattopadhyay, I., Meltzer, H. Y., Kane, J. M. & Guinart, D., Jul 2022, In: Schizophrenia Research. 245, p. 116-121 6 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations
Prizes
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PREPARE Challenge: Phase 1 (Second Place)
Chattopadhyay, I. (Recipient), Sep 1 2024
Prize: Honorary award