A microRNA-regulated transcriptional state defines intratumoral CD8+ T cells that respond to immunotherapy

William W. Tang, Ben Battistone, Kaylyn M. Bauer, Allison M. Weis, Cindy Barba, Muhammad Zaki Hidayatullah Fadlullah, Arevik Ghazaryan, Van B. Tran, Soh Hyun Lee, Z. Busra Agir, Morgan C. Nelson, Emmanuel Stephen Victor, Amber Thibeaux, Colton Hernandez, Jacob Tantalla, Aik C. Tan, Dinesh Rao, Matthew Williams, Micah J. Drummond, Ellen J. BeswickJune L. Round, H. Atakan Ekiz, Warren P. Voth, Ryan M. O'Connell

Research output: Contribution to journalArticlepeer-review

Abstract

The rising incidence of advanced-stage colorectal cancer (CRC) and poor survival outcomes necessitate new and effective therapies. Immune checkpoint inhibitors (ICIs), specifically anti-PD-1 therapy, show promise, yet clinical determinants of a positive response are suboptimal. Here, we identify microRNA-155 (miR-155) as necessary for CD8+ T cell-infiltrated tumors through an unbiased in vivo CRISPR-Cas9 screen identifying functional tumor antigen-specific CD8+ T cell-expressed microRNAs. T cell miR-155 is required for anti-PD-1 responses and for a vital intratumor CD8+ T cell differentiation cascade by repressing Ship-1, inhibiting Tcf-1 and stemness, and subsequently enhancing Cxcr6 expression, anti-tumor immunity, and effector functions. Based on an underlying miR-155-dependent CD8+ T cell transcriptional profile, we identify a gene signature that predicts ICI responses across 12 diverse cancers. Together, our findings support a model whereby miR-155 serves as a central regulator of CD8+ T cell-dependent cancer immunity and ICI responses that may be leveraged for future therapeutics.

Original languageEnglish
Article number115301
JournalCell Reports
Volume44
Issue number2
DOIs
StatePublished - Feb 25 2025

Bibliographical note

Publisher Copyright:
© 2025 The Author(s)

Keywords

  • CD8 T cell
  • CP: Cancer
  • CP: Immunology
  • Cxcr6
  • Ship-1
  • Tcf-1
  • anti-PD-1
  • biomarker
  • colorectal cancer
  • immune checkpoint inhibition
  • immunotherapy
  • microRNA-155

ASJC Scopus subject areas

  • General Biochemistry, Genetics and Molecular Biology

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