Abstract
We present a set of utilities and graphical user interface (GUI) tools for evaluating the quality of protein resonance assignments. The Assignment Validation Software (AVS) suite, together with new GUI features in the AutoAssign software package, provides a set of reports and graphs for validating protein resonance assignment data before its use in structure analysis and/or submission to the BioMagResBank (BMRB). Input includes a listing of resonance assignments and a summary of sequential connectivity data (i.e. triple resonance, NOE, or other data) used in deriving the assignments. These tools are useful for evaluating the accuracy of protein resonance assignments determined by either automated or manual method.
| Original language | English |
|---|---|
| Pages (from-to) | 341-355 |
| Number of pages | 15 |
| Journal | Journal of Biomolecular NMR |
| Volume | 28 |
| Issue number | 4 |
| DOIs | |
| State | Published - Apr 2004 |
Bibliographical note
Funding Information:We thank G.V.T. Swapna for helpful discussions and suggestions, and the intermediate RbfA assignments, James Aramini for ER14 and JR19 data and assignments, Daniel Monleon for WR33 assignments and spin system connectivity data, Marina Kiriyeva for Java coding related to the AutoAssign CMI Editor. We also thank Janet (Yuanpeng) Huang, David Snyder, and Michael Baran for useful comments on the manuscript. This work was supported by grants from the Protein Structure Initiative of the National Institute of Health (P50 GM62413) and The New Jersey Commission on Science and Technology (99-2042-007-13).
Funding
We thank G.V.T. Swapna for helpful discussions and suggestions, and the intermediate RbfA assignments, James Aramini for ER14 and JR19 data and assignments, Daniel Monleon for WR33 assignments and spin system connectivity data, Marina Kiriyeva for Java coding related to the AutoAssign CMI Editor. We also thank Janet (Yuanpeng) Huang, David Snyder, and Michael Baran for useful comments on the manuscript. This work was supported by grants from the Protein Structure Initiative of the National Institute of Health (P50 GM62413) and The New Jersey Commission on Science and Technology (99-2042-007-13).
| Funders | Funder number |
|---|---|
| Italian National Health Institute | P50 GM62413 |
| National Institute of General Medical Sciences | P50GM062413 |
| State of New Jersey Commission on Science and Technology | 99-2042-007-13 |
Keywords
- AutoAssign
- BioMagResBank
- Structural proteomics
ASJC Scopus subject areas
- Biochemistry
- Spectroscopy