Abstract
Rheumatoid arthritis (RA) is an autoimmune disease whose common manifestation involves the slow destruction of joint tissue, damage that is visible in a radiograph. Over time, this damage causes pain and loss of functioning which depends, to some extent, on the spatial deformation induced by the joint damage. Building an accurate model of the current deformation and predicting potential future deformations is an important component of treatment planning. Unfortunately, this is currently a time consuming and labor intensive manual process. To address this problem, we propose a fully automated approach for fitting a shape model to the long bones of the hand from a single radiograph. Critically, our shape model allows sufficient flexibility to be useful for patients in various stages of RA. Our approach uses a deep convolutional neural network to extract low-level features and a conditional random field (CRF) to support shape inference. Our approach is significantly more accurate than previous work that used hand-engineered features. We demonstrate this on two large datasets of hand radiographs and highlight the importance of the low-level features, the relative contribution of different potential functions in the CRF, and the accuracy of the final shape estimates. Our approach is nearly as accurate as a trained radiologist and, because it only requires a few seconds per radiograph, can be applied to large datasets to enable better modeling of disease progression. We will release our code and trained models upon acceptance of this paper.
| Original language | English |
|---|---|
| Title of host publication | Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 |
| Editors | Harald Schmidt, David Griol, Haiying Wang, Jan Baumbach, Huiru Zheng, Zoraida Callejas, Xiaohua Hu, Julie Dickerson, Le Zhang |
| Pages | 919-926 |
| Number of pages | 8 |
| ISBN (Electronic) | 9781538654880 |
| DOIs | |
| State | Published - Jan 21 2019 |
| Event | 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 - Madrid, Spain Duration: Dec 3 2018 → Dec 6 2018 |
Publication series
| Name | Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 |
|---|
Conference
| Conference | 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 |
|---|---|
| Country/Territory | Spain |
| City | Madrid |
| Period | 12/3/18 → 12/6/18 |
Bibliographical note
Publisher Copyright:© 2018 IEEE.
Funding
This material is based upon work supported by the National Science Foundation under Grant No. IIS-1553116.
| Funders | Funder number |
|---|---|
| National Science Foundation (NSF) | IIS-1553116 |
Keywords
- conditional random field
- convolutional neural network
- radiograph
- rheumatoid arthritis
ASJC Scopus subject areas
- Biomedical Engineering
- Health Informatics
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