TY - JOUR
T1 - Complete genome analysis of a novel recombinant isolate of pepper veinal mottle virus from mainland China
AU - Zhang, Songbai
AU - Zhao, Zibing
AU - Zheng, Limin
AU - Liu, Jian
AU - Peng, Jing
AU - Yan, Fei
AU - Li, Fan
AU - Xie, Yan
AU - Cheng, Zhaobang
AU - Zhou, Xuguo
AU - Zhang, Deyong
AU - Liu, Yong
N1 - Publisher Copyright:
© 2015 Zhang et al.
PY - 2015/11/16
Y1 - 2015/11/16
N2 - Background: Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported. Finding: The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 % nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study. Conclusion: The current study will help to understand phylogenetic relationship of isolate PVMV-HN.
AB - Background: Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported. Finding: The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 % nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study. Conclusion: The current study will help to understand phylogenetic relationship of isolate PVMV-HN.
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U2 - 10.1186/s12985-015-0419-9
DO - 10.1186/s12985-015-0419-9
M3 - Article
C2 - 26573722
AN - SCOPUS:84960490563
SN - 1743-422X
VL - 12
JO - Virology Journal
JF - Virology Journal
IS - 1
M1 - 419
ER -
