Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

Brittany N. Zepernick; Anna G. Boegehold; E. Anders Kiledal; Emily E. Chase; Lauren N. Hart; Katelyn A. Houghton; Robbie M. Martin; Paige A. Williams; Emma C. Johnson; Paris K. Schofield; Rose M. Cory; Subba Rao Chaganti; Casey M. Godwin; Trisha L. Spanbauer; Gregory J. Dick; Reagan M. Errera; Steven W. Wilhelm

doi:10.1128/mra.00659-24

Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

Brittany N. Zepernick
, Anna G. Boegehold
, E. Anders Kiledal
, Emily E. Chase
, Lauren N. Hart
, Katelyn A. Houghton
, Robbie M. Martin
, Paige A. Williams
, Emma C. Johnson
, Paris K. Schofield
, Rose M. Cory
, Subba Rao Chaganti
, Casey M. Godwin
, Trisha L. Spanbauer
, Gregory J. Dick
, Reagan M. Errera
, Steven W. Wilhelm

Earth and Environmental Sciences

Research output: Contribution to journal › Article › peer-review

Abstract

Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that Microcystis spp. accounted for up to similar to 47% of the transcriptionally active community.

Original language	English
Number of pages	6
Journal	Microbiology Resource Announcements
Volume	13
Issue number	11
Early online date	Oct 2024
DOIs	https://doi.org/10.1128/mra.00659-24
State	Published - Nov 12 2024

Funding

This work was supported by an SEC Emerging Scholars Fellowship (B.N.Z). Funds from the Great Lakes Center for Fresh Waters and Human Health [National Science Foundation (OCE-1840715) and the National Institute of Environmental Health Sciences (1P01ES028939-01)] through Bowling Green State University contributed to this work. Additional funding was awarded to the Cooperative Institute for Great Lakes Research (CIGLR) through the NOAA Cooperative Agreement with the University of Michigan (NA17OAR4320152), including a grant from NOAA/OAR 'Omics #NO_0086. This work was performed on the University of Tennessee Infrastructure for Scientific Applications and Advanced Computing (ISAAC) computational resources. This CIGLR contribution number is 1241.

Funders	Funder number
SEC Emerging Scholars Award
SEC Emerging Scholars Fellowship	OCE-1840715
Great Lakes Center for Fresh Waters and Human Health [National Science Foundation]	(1P01ES028939-01)
National Institute of Environmental Health Sciences	NA17OAR4320152
Bowling Green State University	NO_0086
NOAA/OAR 'Omics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 13 Climate Action

Keywords

Climate change
Diatoms
Harmful algal blooms
Phytoplankton
Summer

Access to Document

10.1128/mra.00659-24

Cite this

Zepernick, B. N., Boegehold, A. G., Kiledal, E. A., Chase, E. E., Hart, L. N., Houghton, K. A., Martin, R. M., Williams, P. A., Johnson, E. C., Schofield, P. K., Cory, R. M., Chaganti, S. R., Godwin, C. M., Spanbauer, T. L., Dick, G. J., Errera, R. M., & Wilhelm, S. W. (2024). Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events. Microbiology Resource Announcements, 13(11). https://doi.org/10.1128/mra.00659-24

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abstract = "Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that Microcystis spp. accounted for up to similar to 47\% of the transcriptionally active community.",

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Zepernick, BN, Boegehold, AG, Kiledal, EA, Chase, EE, Hart, LN, Houghton, KA, Martin, RM, Williams, PA, Johnson, EC, Schofield, PK, Cory, RM, Chaganti, SR, Godwin, CM, Spanbauer, TL, Dick, GJ, Errera, RM & Wilhelm, SW 2024, 'Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events', Microbiology Resource Announcements, vol. 13, no. 11. https://doi.org/10.1128/mra.00659-24

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AU - Zepernick, Brittany N.

AU - Boegehold, Anna G.

AU - Kiledal, E. Anders

AU - Chase, Emily E.

AU - Hart, Lauren N.

AU - Houghton, Katelyn A.

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AU - Schofield, Paris K.

AU - Cory, Rose M.

AU - Chaganti, Subba Rao

AU - Godwin, Casey M.

AU - Spanbauer, Trisha L.

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AU - Wilhelm, Steven W.

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KW - Diatoms

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Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

Abstract

Funding

UN SDGs

Keywords

Access to Document

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