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Discovery and Evaluation of Active Site-Directed, Potent, and Selective Sulfophenyl Acetic Amide-Based Inhibitors for the Laforin Phosphatase

  • Jianping Lin
  • , Rongjun He
  • , Zihan Qu
  • , Jiajun Dong
  • , Aaron D. Krabill
  • , Li Wu
  • , Yunpeng Bai
  • , Lindsey R. Conroy
  • , Ronald C. Bruntz
  • , Yiming Miao
  • , Brenson A. Jassim
  • , Benjamin Babalola
  • , Frederick Georges Bernard Nguele Meke
  • , Ramon Sun
  • , Matthew S. Gentry
  • , Zhong Yin Zhang

Research output: Contribution to journalArticlepeer-review

Abstract

Lafora disease is a rare and fatal progressive myoclonus epilepsy characterized by the accumulation of insoluble glycogen deposits in the brain and peripheral tissues. Mutations in the gene encoding the glycogen phosphatase laforin result in Lafora disease. Currently, there are no laforin-specific chemical probes, limiting our understanding of the roles of laforin in glycogen metabolism and other cellular processes. Here, we identified sulfophenyl acetic amide (SPAA), as a novel nonhydrolyzable phosphotyrosine mimetic for laforin inhibition. Using fragment-based and scaffold-hopping strategies, we discovered several highly potent and selective active site-directed laforin inhibitors. Among them, compound 9c displayed a Ki value of 1.9 ± 0.2 nM and more than 8300-fold preference for laforin. Moreover, these inhibitors efficiently block laforin-mediated glucan dephosphorylation inside the cell and possess favorable pharmacokinetic properties in mice. These chemical probes will enable further investigation of the roles of laforin in normal physiological processes and in diseases.

Original languageEnglish
Pages (from-to)9220-9240
Number of pages21
JournalJournal of Medicinal Chemistry
Volume68
Issue number9
DOIs
StatePublished - May 8 2025

Bibliographical note

Publisher Copyright:
© 2025 American Chemical Society.

Funding

This work was supported in part by NIH RO1CA069202 and the Robert C. and Charlotte Anderson Chair Endowment to Z.Y.Z. The authors gratefully acknowledge the support of the Chemical Genomics Facility at the Purdue Institute for Drug Discovery. L.R.C. was supported by NIH/NCI training grant T32CA165990. The study was also supported by NIH grants R01CA266004, R01CA288696, R01AG066653, R01AG078702, V-Scholar Grant RM1NS133593 to R.C.S., and R35NS116824 to M.S.G.

FundersFunder number
Purdue Institute for Drug Discovery
Robert C. and Charlotte Anderson Chair Endowment
National Childhood Cancer Registry – National Cancer InstituteR01AG078702, R35NS116824, R01CA288696, R01CA266004, T32CA165990, R01AG066653, RM1NS133593
National Institutes of Health (NIH)RO1CA069202

    ASJC Scopus subject areas

    • Molecular Medicine
    • Drug Discovery

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