Distinct properties underlie flavin-based electron bifurcation in a novel electron transfer flavoprotein FixAB from Rhodopseudomonas palustris

H. Diessel Duan, Carolyn E. Lubner, Monika Tokmina-Lukaszewska, George H. Gauss, Brian Bothner, Paul W. King, John W. Peters, Anne Frances Miller

Research output: Contribution to journalArticlepeer-review

26 Scopus citations

Abstract

A newly recognized third fundamental mechanism of energy conservation in biology, electron bifurcation, uses free energy from exergonic redox reactions to drive endergonic redox reactions. Flavin-based electron bifurcation furnishes low-potential electrons to demanding chemical reactions, such as reduction of dinitrogen to ammonia. We employed the heterodimeric fla-voenzyme FixAB from the diazotrophic bacterium Rhodopseudomonas palustris to elucidate unique properties that underpin flavin-based electron bifurcation. FixAB is distinguished from canonical electron transfer flavoproteins (ETFs) by a second FAD that replaces the AMP of canonical ETF. We exploited near-UV-visible CD spectroscopy to resolve signals from the different flavin sites in FixAB and to interrogate the putative bifurcating FAD. CD aided in assigning the measured reduction midpoint potentials (E° values) to individual flavins, and the E° values tested the accepted model regarding the redox properties required for bifurcation. We found that the higher-E° flavin displays sequential one-electron (1-e) reductions to anionic semiquinone and then to hydroquinone, consistent with the reactivity seen in canonical ETFs. In contrast, the lower-E° flavin displayed a single two-electron (2-e) reduction without detectable accumulation of semiquinone, consistent with unstable semiquinone states, as required for bifurcation. This is the first demonstration that a FixAB protein possesses the thermodynamic prerequisites for bifurcating activity, and the separation of distinct optical signatures for the two flavins lays a foundation for mechanistic studies to learn how electron flow can be directed in a protein environment. We propose that a novel optical signal observed at long wavelength may reflect electron delocalization between the two flavins.

Original languageEnglish
Pages (from-to)4688-4701
Number of pages14
JournalJournal of Biological Chemistry
Volume293
Issue number13
DOIs
StatePublished - Mar 30 2018

Bibliographical note

Publisher Copyright:
© 2018 American Society for Biochemistry and Molecular Biology Inc. All Rights Reserved.

Funding

Acknowledgments—We thank Professor Caroline Harwood (University of Washington) for the gift of R. palustris genomic DNA, Professor Edith Glazer (University of Kentucky) for the access to a high-capacity centrifuge, and the Montana State University Microfabrication Facility for help in preparation of gold-coated borosilicate glass capillaries for non-covalent mass spectrometry. We thank Rhesa Ledbetter, Amaya Garcia Costas, and Gerrit Schut for insightful conversations. A. F. M. acknowledges the hospitality of the Technische Universität-Berlin and the support of UNICAT during the revision of the manuscript. The Proteomics, Metabolomics, and Mass Spectrometry Facility at Montana State University has received support from the Murdock Charitable Trust and NIGMS, National Institutes of Health, under Grant P20GM103474. This work was supported as part of the Biological Electron Transfer and Catal-ysis (BETCy) EFRC, an Energy Frontier Research Center funded by the United States Department of Energy, Office of Science, Basic Energy Sci-ences, (DE-SC0012518). The authors declare that they have no conflicts of interest with the contents of this article. The content is solely the respon-sibility of the authors and does not necessarily represent the official views of the National Institutes of Health. This work was supported as part of the Biological Electron Transfer and Catalysis (BETCy) EFRC, an Energy Frontier Research Center funded by the United States Department of Energy, Office of Science, Basic Energy Sciences, (DE-SC0012518). The authors declare that they have no conflicts of interest with the contents of this article. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. 1 Supported by the United States Department of Energy under Contract DE-AC36-08-GO28308 with the National Renewable Energy Laboratory. We thank Professor Caroline Harwood (University of Washington) for the gift of R. palustris genomic DNA, Professor Edith Glazer (University of Kentucky) for the access to a high-capacity centrifuge, and the Montana State University Microfabrication Facility for help in preparation of gold-coated borosilicate glass capillaries for non-covalent mass spectrometry. We thank Rhesa Ledbetter, Amaya Garcia Costas, and Gerrit Schut for insightful conversations. A. F. M. acknowledges the hospitality of the Technische Universität-Berlin and the support of UNICAT during the revision of the manuscript. The Proteomics, Metabolomics, and Mass Spectrometry Facility at Montana State University has received support from the Murdock Charitable Trust and NIGMS, National Institutes of Health, under Grant P20GM103474. 1Supported by the United States Department of Energy under Contract DE-AC36-08-GO28308 with the National Renewable Energy Laboratory.

FundersFunder number
EFRC
Mass Spectrometry Facility at Montana State University
National Institutes of Health (NIH)
Michigan State University-U.S. Department of Energy (MSU-DOE) Plant Research LaboratoryDE-AC36-08-GO28308
National Institute of General Medical SciencesP20GM103474
M.J. Murdock Charitable Trust
Office of Science Programs
Office of Basic Energy SciencesDE-SC0012518
National Renewable Energy Laboratory
University of Kentucky
The George Washington University
Australian National Fabrication Facility (ANFF)
Montana State University
BioElectric
UK Energy Research Centre
Technische Universität Berlin
Vysoká Škola Ekonomická v Praze
Universidad de Ciego de Ávila

    ASJC Scopus subject areas

    • Biochemistry
    • Molecular Biology
    • Cell Biology

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