Abstract
A central goal in evolutionary biology is to determine the predictability of adaptive genetic changes. Despite many documented cases of convergent evolution at individual loci, little is known about the repeatability of gene family expansions and contractions. To address this void, we examined gene family evolution in the redheaded pine sawfly Neodiprion lecontei, a noneusocial hymenopteran and exemplar of a pine-specialized lineage evolved from angiosperm-feeding ancestors. After assembling and annotating a draft genome, we manually annotated multiple gene families with chemosensory, detoxification, or immunity functions before characterizing their genomic distributions and molecular evolution. We find evidence of recent expansions of bitter gustatory receptor, clan 3 cytochrome P450, olfactory receptor, and antimicrobial peptide subfamilies, with strong evidence of positive selection among paralogs in a clade of gustatory receptors possibly involved in the detection of bitter compounds. In contrast, these gene families had little evidence of recent contraction via pseudogenization. Overall, our results are consistent with the hypothesis that in response to novel selection pressures, gene families that mediate ecological interactions may expand and contract predictably. Testing this hypothesis will require the comparative analysis of high-quality annotation data from phylogenetically and ecologically diverse insect species and functionally diverse gene families. To this end, increasing sampling in under-sampled hymenopteran lineages and environmentally responsive gene families and standardizing manual annotation methods should be prioritized.
| Original language | English |
|---|---|
| Article number | e10506 |
| Journal | Ecology and Evolution |
| Volume | 13 |
| Issue number | 10 |
| DOIs | |
| State | Published - Oct 2023 |
Bibliographical note
Publisher Copyright:© 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
Funding
We thank Linnen lab members for insect collection, insect reading, and reading earlier manuscripts. We thank Jeramiah Smith, Erin Scully, and Romain Studer for advice. We are especially grateful to Hugh Robertson for his guidance on manual chemoreceptor gene annotation. This work was supported by the University of Kentucky Center for Computational Sciences and the Lipscomb High Performance Computing Cluster; the United States Department of Agriculture National Institute of Food and Agriculture; the Kentucky Science and Engineering Foundation; the University of Kentucky.
| Funders | Funder number |
|---|---|
| US Department of Agriculture National Institute of Food and Agriculture, Agriculture and Food Research Initiative | |
| Kentucky Science and Engineering Foundation | |
| University of Kentucky | |
| University of Kentucky Information Technology Department and Center for Computational Sciences | |
| ???publication-publication-funding-organisation-not-added??? | 0000 |
Keywords
- Hymenoptera
- chemosensation
- detoxification
- evolutionary predictability
- gene family evolution
- immunity
ASJC Scopus subject areas
- Ecology, Evolution, Behavior and Systematics
- Ecology
- Nature and Landscape Conservation
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