Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi

Laura H. Okagaki; Cristiano C. Nunes; Joshua Sailsbery; Brent Clay; Doug Brown; Titus John; Yeonyee Oh; Nelson Young; Michael Fitzgerald; Brian J. Haas; Qiandong Zeng; Sarah Young; Xian Adiconis; Lin Fan; Joshua Z. Levin; Thomas K. Mitchell; Patricia A. Okubara; Mark L. Farman; Linda M. Kohn; Bruce Birren; Li Jun Ma; Ralph A. Dean

doi:10.1534/g3.115.020057

Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi

Laura H. Okagaki, Cristiano C. Nunes, Joshua Sailsbery, Brent Clay, Doug Brown, Titus John, Yeonyee Oh, Nelson Young, Michael Fitzgerald, Brian J. Haas, Qiandong Zeng, Sarah Young, Xian Adiconis, Lin Fan, Joshua Z. Levin, Thomas K. Mitchell, Patricia A. Okubara, Mark L. Farman, Linda M. Kohn, Bruce BirrenLi Jun Ma, Ralph A. Dean

Research output: Contribution to journal › Article › peer-review

30 Scopus citations

Abstract

Magnaporthaceae is a family of ascomycetes that includes three fungi of great economic importance: Magnaporthe oryzae, Gaeumannomyces graminis var. tritici, and Magnaporthe poae. These three fungi cause widespread disease and loss in cereal and grass crops, including rice blast disease (M. oryzae), take-all disease in wheat and other grasses (G. graminis), and summer patch disease in turf grasses (M. poae). Here, we present the finished genome sequence for M. oryzae and draft sequences for M. poae and G. graminis var. tritici. We used multiple technologies to sequence and annotate the genomes of M. oryzae, M. poae, and G. graminis var. tritici. The M. oryzae genome is now finished to seven chromosomes whereas M. poae and G. graminis var. tritici are sequenced to 40.0* and 25.0* coverage respectively. Gene models were developed by the use of multiple computational techniques and further supported by RNAseq data. In addition, we performed preliminary analysis of genome architecture and repetitive element DNA.

Original language	English
Pages (from-to)	2539-2545
Number of pages	7
Journal	G3: Genes, Genomes, Genetics
Volume	5
Issue number	12
DOIs	https://doi.org/10.1534/g3.115.020057
State	Published - 2015

Bibliographical note

Publisher Copyright:
© 2015 Okagaki et al.

Funding

Funders	Funder number
University of Northern Arizona
U.S. Department of Energy Chinese Academy of Sciences Guangzhou Municipal Science and Technology Project Oak Ridge National Laboratory Extreme Science and Engineering Discovery Environment National Science Foundation National Energy Research Scientific Computing Center National Natural Science Foundation of China	0731808, 0333269
National Institutes of Health (NIH)	5T32-AI052080-09
U.S. Department of Energy Chinese Academy of Sciences Guangzhou Municipal Science and Technology Project Oak Ridge National Laboratory Extreme Science and Engineering Discovery Environment National Science Foundation National Energy Research Scientific Computing Center National Natural Science Foundation of China	MCB-0333269
Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases	U19AI110818

Keywords

Gaeumannomyces
Magnaporthe
Repetitive DNA
Sequence
Synteny

ASJC Scopus subject areas

Molecular Biology
Genetics
Genetics(clinical)

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10.1534/g3.115.020057

Cite this

Okagaki, L. H., Nunes, C. C., Sailsbery, J., Clay, B., Brown, D., John, T., Oh, Y., Young, N., Fitzgerald, M., Haas, B. J., Zeng, Q., Young, S., Adiconis, X., Fan, L., Levin, J. Z., Mitchell, T. K., Okubara, P. A., Farman, M. L., Kohn, L. M., ... Dean, R. A. (2015). Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi. G3: Genes, Genomes, Genetics, 5(12), 2539-2545. https://doi.org/10.1534/g3.115.020057

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title = "Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi",

abstract = "Magnaporthaceae is a family of ascomycetes that includes three fungi of great economic importance: Magnaporthe oryzae, Gaeumannomyces graminis var. tritici, and Magnaporthe poae. These three fungi cause widespread disease and loss in cereal and grass crops, including rice blast disease (M. oryzae), take-all disease in wheat and other grasses (G. graminis), and summer patch disease in turf grasses (M. poae). Here, we present the finished genome sequence for M. oryzae and draft sequences for M. poae and G. graminis var. tritici. We used multiple technologies to sequence and annotate the genomes of M. oryzae, M. poae, and G. graminis var. tritici. The M. oryzae genome is now finished to seven chromosomes whereas M. poae and G. graminis var. tritici are sequenced to 40.0* and 25.0* coverage respectively. Gene models were developed by the use of multiple computational techniques and further supported by RNAseq data. In addition, we performed preliminary analysis of genome architecture and repetitive element DNA.",

keywords = "Gaeumannomyces, Magnaporthe, Repetitive DNA, Sequence, Synteny",

author = "Okagaki, \{Laura H.\} and Nunes, \{Cristiano C.\} and Joshua Sailsbery and Brent Clay and Doug Brown and Titus John and Yeonyee Oh and Nelson Young and Michael Fitzgerald and Haas, \{Brian J.\} and Qiandong Zeng and Sarah Young and Xian Adiconis and Lin Fan and Levin, \{Joshua Z.\} and Mitchell, \{Thomas K.\} and Okubara, \{Patricia A.\} and Farman, \{Mark L.\} and Kohn, \{Linda M.\} and Bruce Birren and Ma, \{Li Jun\} and Dean, \{Ralph A.\}",

note = "Publisher Copyright: {\textcopyright} 2015 Okagaki et al.",

year = "2015",

doi = "10.1534/g3.115.020057",

language = "English",

volume = "5",

pages = "2539--2545",

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Okagaki, LH, Nunes, CC, Sailsbery, J, Clay, B, Brown, D, John, T, Oh, Y, Young, N, Fitzgerald, M, Haas, BJ, Zeng, Q, Young, S, Adiconis, X, Fan, L, Levin, JZ, Mitchell, TK, Okubara, PA, Farman, ML, Kohn, LM, Birren, B, Ma, LJ & Dean, RA 2015, 'Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi', G3: Genes, Genomes, Genetics, vol. 5, no. 12, pp. 2539-2545. https://doi.org/10.1534/g3.115.020057

TY - JOUR

T1 - Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi

AU - Okagaki, Laura H.

AU - Nunes, Cristiano C.

AU - Sailsbery, Joshua

AU - Clay, Brent

AU - Brown, Doug

AU - John, Titus

AU - Oh, Yeonyee

AU - Young, Nelson

AU - Fitzgerald, Michael

AU - Haas, Brian J.

AU - Zeng, Qiandong

AU - Young, Sarah

AU - Adiconis, Xian

AU - Fan, Lin

AU - Levin, Joshua Z.

AU - Mitchell, Thomas K.

AU - Okubara, Patricia A.

AU - Farman, Mark L.

AU - Kohn, Linda M.

AU - Birren, Bruce

AU - Ma, Li Jun

AU - Dean, Ralph A.

PY - 2015

Y1 - 2015

N2 - Magnaporthaceae is a family of ascomycetes that includes three fungi of great economic importance: Magnaporthe oryzae, Gaeumannomyces graminis var. tritici, and Magnaporthe poae. These three fungi cause widespread disease and loss in cereal and grass crops, including rice blast disease (M. oryzae), take-all disease in wheat and other grasses (G. graminis), and summer patch disease in turf grasses (M. poae). Here, we present the finished genome sequence for M. oryzae and draft sequences for M. poae and G. graminis var. tritici. We used multiple technologies to sequence and annotate the genomes of M. oryzae, M. poae, and G. graminis var. tritici. The M. oryzae genome is now finished to seven chromosomes whereas M. poae and G. graminis var. tritici are sequenced to 40.0* and 25.0* coverage respectively. Gene models were developed by the use of multiple computational techniques and further supported by RNAseq data. In addition, we performed preliminary analysis of genome architecture and repetitive element DNA.

AB - Magnaporthaceae is a family of ascomycetes that includes three fungi of great economic importance: Magnaporthe oryzae, Gaeumannomyces graminis var. tritici, and Magnaporthe poae. These three fungi cause widespread disease and loss in cereal and grass crops, including rice blast disease (M. oryzae), take-all disease in wheat and other grasses (G. graminis), and summer patch disease in turf grasses (M. poae). Here, we present the finished genome sequence for M. oryzae and draft sequences for M. poae and G. graminis var. tritici. We used multiple technologies to sequence and annotate the genomes of M. oryzae, M. poae, and G. graminis var. tritici. The M. oryzae genome is now finished to seven chromosomes whereas M. poae and G. graminis var. tritici are sequenced to 40.0* and 25.0* coverage respectively. Gene models were developed by the use of multiple computational techniques and further supported by RNAseq data. In addition, we performed preliminary analysis of genome architecture and repetitive element DNA.

KW - Gaeumannomyces

KW - Magnaporthe

KW - Repetitive DNA

KW - Sequence

KW - Synteny

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U2 - 10.1534/g3.115.020057

DO - 10.1534/g3.115.020057

M3 - Article

C2 - 26416668

AN - SCOPUS:84949964854

SN - 2160-1836

VL - 5

SP - 2539

EP - 2545

JO - G3: Genes, Genomes, Genetics

JF - G3: Genes, Genomes, Genetics

IS - 12

ER -

Genome sequences of three phytopathogenic species of the magnaporthaceae family of fungi

Abstract

Bibliographical note

Funding

Keywords

ASJC Scopus subject areas

Access to Document

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