Genome-wide determination of poly(A) site choice in plants

Pratap Kumar Pati, Liuyin Ma, Arthur G. Hunt

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

1 Scopus citations

Abstract

Second generation DNA sequencing technologies have been a great boon for the study of mRNA polyadenylation. The experimental determination of large numbers of polyadenylation sites using highthroughput sequencing strategies has provided the necessary platform for deeper understanding the regulation of gene expression in eukaryotes. For generating large sets of data to map poly-A sites, specialized sample preparations that target the junction of 3'-UTR and the poly(A) tail are usually employed. Here, we describe three different protocols that are effectively used for global determinations of poly(A) site choice in plants.

Original languageEnglish
Title of host publicationPolyadenylation in Plants
Subtitle of host publicationMethods and Protocols
Pages159-174
Number of pages16
ISBN (Electronic)9781493921751
DOIs
StatePublished - Dec 8 2014

Bibliographical note

Publisher Copyright:
© Springer Science+Business Media New York 2015. All rights are reserved.

Keywords

  • Alternative polyadenylation
  • Gene expression
  • High-throughput sequencing
  • PAT-seq

ASJC Scopus subject areas

  • Agricultural and Biological Sciences (all)
  • Medicine (all)
  • Biochemistry, Genetics and Molecular Biology (all)

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