High-resolution electron spectroscopy and structures of lithium-nucleobase (adenine, uracil, and thymine) complexes

Serge A. Krasnokutski, Jung Sup Lee, Dong Sheng Yang

Research output: Contribution to journalArticlepeer-review

19 Scopus citations

Abstract

Li complexes of adenine, uracil, and thymine were produced by laser vaporization of rods made of Li and nucleobase powders in a metal-cluster beam source and studied by pulsed-field-ionization zero-electron-kinetic-energy (ZEKE) spectroscopy and density functional theory calculations. The ZEKE measurements determined the adiabatic ionization energies of the three neutral complexes and frequencies of several vibrational modes for the metal-adenine and -uracil ions. The measured spectra were compared with spectral simulations to determine the preferred metal binding sites. For adenine, the most stable structure is formed by Li/ Li+ bidentately binding to both the N7 atom of the imidazole ring and the NH2 group of the pyrimidine ring. For uracil and thymine, the ideal site for Li/ Li+ coordination is the O4 atom. Although it has only a small effect on the geometries of uracil and thymine, lithium coordination forces the rotation of the NH2 group out of the adenine plane. The adiabatic ionization energies of the three complexes follow the trend of uracil (33910±5 cm-1) thymine (33386±5 cm-1) > adenine (32240±5 cm-1), whereas their metal-ligand bond dissociation energies are about the same, (92-97) ±6 kJ mol-1. For all three complexes, the neutral bond energies are smaller than those of the corresponding ions due to a weaker electrostatic interaction and stronger electron repulsion.

Original languageEnglish
Article number044304
JournalJournal of Chemical Physics
Volume132
Issue number4
DOIs
StatePublished - 2010

Bibliographical note

Funding Information:
We are grateful for the financial support from the Experimental Physical Chemistry Program of the National Science Foundation. We also acknowledge additional support from donors of the Petroleum Research Fund of the American Chemical Society and Kentucky Science and Engineering Foundation.

ASJC Scopus subject areas

  • Physics and Astronomy (all)
  • Physical and Theoretical Chemistry

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