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Integration of pan-omics technologies and three-dimensional in vitro tumor models: an approach toward drug discovery and precision medicine

  • Anmi Jose
  • , Pallavi Kulkarni
  • , Jaya Thilakan
  • , Murali Munisamy
  • , Anvita Gupta Malhotra
  • , Jitendra Singh
  • , Ashok Kumar
  • , Vivek M. Rangnekar
  • , Neha Arya
  • , Mahadev Rao

Research output: Contribution to journalReview articlepeer-review

43 Scopus citations

Abstract

Despite advancements in treatment protocols, cancer is one of the leading cause of deaths worldwide. Therefore, there is a need to identify newer and personalized therapeutic targets along with screening technologies to combat cancer. With the advent of pan-omics technologies, such as genomics, transcriptomics, proteomics, metabolomics, and lipidomics, the scientific community has witnessed an improved molecular and metabolomic understanding of various diseases, including cancer. In addition, three-dimensional (3-D) disease models have been efficiently utilized for understanding disease pathophysiology and as screening tools in drug discovery. An integrated approach utilizing pan-omics technologies and 3-D in vitro tumor models has led to improved understanding of the intricate network encompassing various signalling pathways and molecular cross-talk in solid tumors. In the present review, we underscore the current trends in omics technologies and highlight their role in understanding genotypic-phenotypic co-relation in cancer with respect to 3-D in vitro tumor models. We further discuss the challenges associated with omics technologies and provide our outlook on the future applications of these technologies in drug discovery and precision medicine for improved management of cancer. Graphical Abstract: (Figure presented.).

Original languageEnglish
Article number50
JournalMolecular Cancer
Volume23
Issue number1
DOIs
StatePublished - Dec 2024

Bibliographical note

Publisher Copyright:
© The Author(s) 2024.

Funding

AJ [IF190197] is thankful to the Department of Science and Technology, for providing DST-INSPIRE Fellowship. PK (45/20/2020-PHA/BMS) and JT (5/3/8/19/ITR-F/2019-ITR) are thankful to Indian Council of Medical Research (ICMR) for providing Senior Research Fellowship. NA acknowledges SERB POWER grant from Science and Engineering Research Board for financial support (SPG/2021/004209). AK acknowledges financial support from ICMR (5/13/93/2020/NCD-III). AJ, PK, JT, AM, JS, AK, MM and NA would like to acknowledge AIIMS Bhopal. Graphical abstract and Figure 1 were created with BioRender.com. AJ [IF190197] is thankful to the Department of Science and Technology, for providing DST-INSPIRE Fellowship. PK (45/20/2020-PHA/BMS) and JT (5/3/8/19/ITR-F/2019-ITR) are thankful to Indian Council of Medical Research (ICMR) for providing Senior Research Fellowship. NA acknowledges SERB POWER grant from Science and Engineering Research Board for financial support (SPG/2021/004209). AK acknowledges financial support from ICMR (5/13/93/2020/NCD-III). AJ, PK, JT, AM, JS, AK, MM and NA would like to acknowledge AIIMS Bhopal. Graphical abstract and Figure were created with BioRender.com.

FundersFunder number
Indian Council of Medical Research
All India Institute of Medical Sciences, Bhubaneswar
Department of Science and Technology, Ministry of Science and Technology, India45/20/2020-PHA/BMS, 5/3/8/19/ITR-F/2019-ITR
Department of Science and Technology, Ministry of Science and Technology, India
Science and Engineering Research Board5/13/93/2020/NCD-III, SPG/2021/004209
Science and Engineering Research Board

    UN SDGs

    This output contributes to the following UN Sustainable Development Goals (SDGs)

    1. SDG 3 - Good Health and Well-being
      SDG 3 Good Health and Well-being

    Keywords

    • 3-D in vitro tumor models
    • Genomics
    • Lipidomics
    • Multi-omics
    • Patient-derived organoids
    • Precision medicine
    • Transcriptomics

    ASJC Scopus subject areas

    • Molecular Medicine
    • Oncology
    • Cancer Research

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