Isoform of APOE with retained intron 3; Quantitation and identification of an associated single nucleotide polymorphism

Laura S. Dieter, Steven Estus

Research output: Contribution to journalArticlepeer-review

6 Scopus citations


Abstract. Background. Alleles of apolipoprotein E (APOE) are the major genetic risk factor for late onset Alzheimer's Disease (LOAD). Recently, an APOE splice variant that retains intron 3 (APOE-I3) was identified. To gain insight into the possible role of this isoform in LOAD, we quantified its expression in a cohort of 56 human brain specimens by using quantitative RT-PCR. Results. We found that APOE-I3 generally represents a low percentage (< 0.5%) of overall APOE expression. However, in one specimen, the proportion of APOE-I3 was increased about ∼13 fold. This specimen was unique in the cohort for possessing the minor allele of an intron 3 single nucleotide polymorphism (SNP), rs12982192. Additionally, an allelic expression imbalance study indicated that the rs12982192 minor allele was associated with increased APOE-I3 expression. Conclusions. Overall, we interpret our results as suggesting that APOE-I3 represents a minor portion of APOE expression and that rs12982192 is associated with APOE intron 3 retention. Since the minor allele of this SNP is on the same haplotype as the minor allele of rs429358, which defines the APOE4 allele, we speculate that rs12982192 may reflect a modest loss of mRNA encoding functional APOE4.

Original languageEnglish
Article number34
JournalMolecular Neurodegeneration
Issue number1
StatePublished - 2010

Bibliographical note

Funding Information:
The authors gratefully acknowledge tissue supplied by the University of Kentucky AD Center, which is supported by P30AG028383, as well as NIH for grant support (R01AG026147 and P01AG030128).

ASJC Scopus subject areas

  • Molecular Biology
  • Clinical Neurology
  • Cellular and Molecular Neuroscience


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