Kinetic mechanism of the tRNA-modifying enzyme S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA)

Steven G. Van Lanen, Dirk Iwata-Reuyl

Research output: Contribution to journalArticlepeer-review

29 Scopus citations

Abstract

The bacterial enzyme S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) catalyzes the unprecedented transfer and isomerization of the ribosyl moiety of S-adenosylmethionine (AdoMet) to a modified tRNA nucleoside in the biosynthesis of the hypermodified nucleoside queuosine. The complexity of this reaction makes it a compelling problem in fundamental mechanistic enzymology, and as part of our mechanistic studies of the QueA-catalyzed reaction, we report here the elucidation of the steady-state kinetic mechanism, Bi-substrate kinetic analysis gave initial velocity patterns indicating a sequential mechanism, and provided the following kinetic constants: KMtRNA = 1.9 ± 0.7 μM and KMAdoMet 98 ± 5.0 μM. Dead-end inhibition studies with the substrate analogues S-adenosylhomocysteine and sinefungin gave competitive inhibition patterns against AdoMet and noncompetitive patterns against preQ1-tRNATyr, with Ki values of 133 ± 18 and 4.6 ± 0.5 μM for sinefungin and S- adenosylhomocysteine, respectively. Product inhibition by adenine was noncompetitive against both substrates under conditions with a subsaturating cosubstrate concentration and uncompetitive against preQ1-tRNATyr when AdoMet was saturating. Inhibition by the tRNA product (oQ-tRNATyr) was competitive and noncompetitive against the substrates preQ1-tRNATyr and AdoMet, respectively. Inhibition by methionine was uncompetitive versus preQ1-tRNATyr, but noncompetitive against AdoMet. However, when methionine inhibition was investigated at high AdoMet concentrations, the pattern was uncompetitive. Taken together, the data are consistent with a fully ordered sequential bi-ter kinetic mechanism in which preQ1-tRNATyr binds first followed by AdoMet, with product release in the order adenine, methionine, and oQ-tRNA. The chemical mechanism that we previously proposed for the QueA-catalyzed reaction [Daoud Kinzie, S., Thern, B., and Iwata-Reuyl, D. (2000) Org. Lett. 2, 1307-1310] is consistent with the constraints imposed by the kinetic mechanism determined here, and we suggest that the magnitude of the inhibition constants for the dead-end inhibitors may provide insight into the catalytic strategy employed by the enzyme.

Original languageEnglish
Pages (from-to)5312-5320
Number of pages9
JournalBiochemistry
Volume42
Issue number18
DOIs
StatePublished - May 13 2003

ASJC Scopus subject areas

  • Biochemistry

Fingerprint

Dive into the research topics of 'Kinetic mechanism of the tRNA-modifying enzyme S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA)'. Together they form a unique fingerprint.

Cite this