TY - JOUR
T1 - Promoting FAIR Data Through Community-driven Agile Design
T2 - the Open Data Commons for Spinal Cord Injury (odc-sci.org)
AU - Torres-Espín, Abel
AU - Almeida, Carlos A.
AU - Chou, Austin
AU - Huie, J. Russell
AU - Chiu, Michael
AU - Vavrek, Romana
AU - Sacramento, Jeff
AU - Orr, Michael B.
AU - Gensel, John C.
AU - Grethe, Jeffery S.
AU - Martone, Maryann E.
AU - Fouad, Karim
AU - Ferguson, Adam R.
AU - Alilain, Warren
AU - Bacon, Mark
AU - Batty, Nicholas
AU - Beattie, Michael
AU - Bresnahan, Jacqueline
AU - Burnside, Emily
AU - Busch, Sarah
AU - Carpenter, Randall
AU - Quijorna, Isaac Francos
AU - Guo, Xiaohui
AU - Haggerty, Agnes
AU - Haroon, Sarah
AU - Harris, Jack
AU - Jakeman, Lyn
AU - Jones, Linda
AU - Kleitman, Naomi
AU - Kopper, Timothy
AU - Lane, Michael
AU - Magana, Francisco
AU - Magnuson, David
AU - Maldonado, Ines
AU - May, Verena
AU - McFarlane, Katelyn
AU - Morioka, Kazuhito
AU - Oudega, Martin
AU - Pascual, Philip Leo
AU - Poline, Jean Baptiste
AU - Rosenzweig, Ephron
AU - Schmidt, Emma
AU - Tetzlaff, Wolfram
AU - Zholudeva, Lana
N1 - Publisher Copyright:
© 2021, The Author(s).
PY - 2022/1
Y1 - 2022/1
N2 - The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a ‘data dump’ that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on ‘long-tail’ preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields.
AB - The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a ‘data dump’ that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on ‘long-tail’ preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields.
KW - Data sharing
KW - FAIR
KW - community repository
KW - data reuse
KW - neurotrauma
KW - spinal cord injury
UR - http://www.scopus.com/inward/record.url?scp=85112612160&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85112612160&partnerID=8YFLogxK
U2 - 10.1007/s12021-021-09533-8
DO - 10.1007/s12021-021-09533-8
M3 - Article
C2 - 34347243
AN - SCOPUS:85112612160
SN - 1539-2791
VL - 20
SP - 203
EP - 219
JO - Neuroinformatics
JF - Neuroinformatics
IS - 1
ER -