Skip to main navigation Skip to search Skip to main content

The nephrologist of tomorrow: towards a kidney-omic future

  • Mina H. Hanna
  • , Alessandra Dalla Gassa
  • , Gert Mayer
  • , Gianluigi Zaza
  • , Patrick D. Brophy
  • , Loreto Gesualdo
  • , Francesco Pesce

Research output: Contribution to journalReview articlepeer-review

22 Scopus citations

Abstract

Omics refers to the collective technologies used to explore the roles and relationships of the various types of molecules that make up the phenotype of an organism. Systems biology is a scientific discipline that endeavours to quantify all of the molecular elements of a biological system. Therefore, it reflects the knowledge acquired by omics in a meaningful manner by providing insights into functional pathways and regulatory networks underlying different diseases. The recent advances in biotechnological platforms and statistical tools to analyse such complex data have enabled scientists to connect the experimentally observed correlations to the underlying biochemical and pathological processes. We discuss in this review the current knowledge of different omics technologies in kidney diseases, specifically in the field of pediatric nephrology, including biomarker discovery, defining as yet unrecognized biologic therapeutic targets and linking omics to relevant standard indices and clinical outcomes. We also provide here a unique perspective on the field, taking advantage of the experience gained by the large-scale European research initiative called “Systems Biology towards Novel Chronic Kidney Disease Diagnosis and Treatment” (SysKid). Based on the integrative framework of Systems biology, SysKid demonstrated how omics are powerful yet complex tools to unravel the consequences of diabetes and hypertension on kidney function.

Original languageEnglish
Pages (from-to)393-404
Number of pages12
JournalPediatric Nephrology
Volume32
Issue number3
DOIs
StatePublished - Mar 1 2017

Bibliographical note

Publisher Copyright:
© 2016, IPNA.

Funding

SysKid was funded for a period of 5 years by the European framework programme 7 ( www.syskid.eu ). The project focused on patients with type 2 diabetes mellitus (T2DM), and one major aim was to develop an integrative, systems biology-driven workflow for identifying persons at risk of incident and/or progressive CKD as well as understanding the molecular processes triggering early stage disease and identifying associated biomarkers. In SysKid, biomarkers were screened following three generic strategies. Explorative approaches were implemented for genetic background [, ], transcripts [–] and serum-based proteomics [, ]. Targeted screening was performed in urinary proteomics [, ] and metabolomics work [, ], and data were complemented by hypothesis-driven biomarker research.

Funders
European Union’s Seventh Framework Programme for Research and Technological Development

    UN SDGs

    This output contributes to the following UN Sustainable Development Goals (SDGs)

    1. SDG 3 - Good Health and Well-being
      SDG 3 Good Health and Well-being

    Keywords

    • Biomarkers
    • Omics
    • Pediatric nephrology
    • SysKid
    • Systems biology

    ASJC Scopus subject areas

    • Pediatrics, Perinatology, and Child Health
    • Nephrology

    Fingerprint

    Dive into the research topics of 'The nephrologist of tomorrow: towards a kidney-omic future'. Together they form a unique fingerprint.

    Cite this