Complete genome analysis of a novel recombinant isolate of pepper veinal mottle virus from mainland China

Songbai Zhang; Zibing Zhao; Limin Zheng; Jian Liu; Jing Peng; Fei Yan; Fan Li; Yan Xie; Zhaobang Cheng; Xuguo Zhou; Deyong Zhang; Yong Liu

doi:10.1186/s12985-015-0419-9

Complete genome analysis of a novel recombinant isolate of pepper veinal mottle virus from mainland China

Songbai Zhang
, Zibing Zhao
, Limin Zheng
, Jian Liu
, Jing Peng
, Fei Yan
, Fan Li
, Yan Xie
, Zhaobang Cheng
, Xuguo Zhou
, Deyong Zhang
, Yong Liu

Entomology

Producción científica: Article › revisión exhaustiva

4 Citas (Scopus)

Resumen

Background: Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported. Finding: The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 % nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study. Conclusion: The current study will help to understand phylogenetic relationship of isolate PVMV-HN.

Idioma original	English
Número de artículo	419
Publicación	Virology Journal
Volumen	12
N.º	1
DOI	https://doi.org/10.1186/s12985-015-0419-9
Estado	Published - nov 16 2015

Nota bibliográfica

Publisher Copyright:
© 2015 Zhang et al.

Financiación

This work was supported by the Special Fund for Agro-scientific Research in the Public Interest (no. 201303028) and the Agriculture Research System of China (CARS-25-B-05).

Financiadores	Número del financiador
Special Fund for Agro-scientific Research in the Public Interest	201303028
Special Fund for Agro-scientific Research in the Public Interest
Agriculture Research System of China	CARS-25-B-05
Agriculture Research System of China

ODS de las Naciones Unidas

Este resultado contribuye a los siguientes Objetivos de Desarrollo Sostenible

Good health and well being

ASJC Scopus subject areas

Virology
Infectious Diseases

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title = "Complete genome analysis of a novel recombinant isolate of pepper veinal mottle virus from mainland China",

abstract = "Background: Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported. Finding: The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 \% nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study. Conclusion: The current study will help to understand phylogenetic relationship of isolate PVMV-HN.",

author = "Songbai Zhang and Zibing Zhao and Limin Zheng and Jian Liu and Jing Peng and Fei Yan and Fan Li and Yan Xie and Zhaobang Cheng and Xuguo Zhou and Deyong Zhang and Yong Liu",

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AU - Zhang, Songbai

AU - Zhao, Zibing

AU - Zheng, Limin

AU - Liu, Jian

AU - Peng, Jing

AU - Yan, Fei

AU - Li, Fan

AU - Xie, Yan

AU - Cheng, Zhaobang

AU - Zhou, Xuguo

AU - Zhang, Deyong

AU - Liu, Yong

PY - 2015/11/16

Y1 - 2015/11/16

N2 - Background: Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported. Finding: The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 % nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study. Conclusion: The current study will help to understand phylogenetic relationship of isolate PVMV-HN.

AB - Background: Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported. Finding: The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 % nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study. Conclusion: The current study will help to understand phylogenetic relationship of isolate PVMV-HN.

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SN - 1743-422X

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JO - Virology Journal

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Complete genome analysis of a novel recombinant isolate of pepper veinal mottle virus from mainland China

Resumen

Nota bibliográfica

Financiación

ODS de las Naciones Unidas

ASJC Scopus subject areas

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Huella

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