Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

Brittany N. Zepernick; Anna G. Boegehold; E. Anders Kiledal; Emily E. Chase; Lauren N. Hart; Katelyn A. Houghton; Robbie M. Martin; Paige A. Williams; Emma C. Johnson; Paris K. Schofield; Rose M. Cory; Subba Rao Chaganti; Casey M. Godwin; Trisha L. Spanbauer; Gregory J. Dick; Reagan M. Errera; Steven W. Wilhelm

doi:10.1128/mra.00659-24

Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

Brittany N. Zepernick
, Anna G. Boegehold
, E. Anders Kiledal
, Emily E. Chase
, Lauren N. Hart
, Katelyn A. Houghton
, Robbie M. Martin
, Paige A. Williams
, Emma C. Johnson
, Paris K. Schofield
, Rose M. Cory
, Subba Rao Chaganti
, Casey M. Godwin
, Trisha L. Spanbauer
, Gregory J. Dick
, Reagan M. Errera
, Steven W. Wilhelm

Earth and Environmental Sciences

Producción científica: Article › revisión exhaustiva

Resumen

Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that Microcystis spp. accounted for up to similar to 47% of the transcriptionally active community.

Idioma original	English
Número de páginas	6
Publicación	Microbiology Resource Announcements
Volumen	13
N.º	11
Fecha en línea anticipada	oct 2024
DOI	https://doi.org/10.1128/mra.00659-24
Estado	Published - nov 12 2024

Financiación

This work was supported by an SEC Emerging Scholars Fellowship (B.N.Z). Funds from the Great Lakes Center for Fresh Waters and Human Health [National Science Foundation (OCE-1840715) and the National Institute of Environmental Health Sciences (1P01ES028939-01)] through Bowling Green State University contributed to this work. Additional funding was awarded to the Cooperative Institute for Great Lakes Research (CIGLR) through the NOAA Cooperative Agreement with the University of Michigan (NA17OAR4320152), including a grant from NOAA/OAR 'Omics #NO_0086. This work was performed on the University of Tennessee Infrastructure for Scientific Applications and Advanced Computing (ISAAC) computational resources. This CIGLR contribution number is 1241.

Financiadores	Número del financiador
SEC Emerging Scholars Award
SEC Emerging Scholars Fellowship	OCE-1840715
Great Lakes Center for Fresh Waters and Human Health [National Science Foundation]	(1P01ES028939-01)
National Institute of Environmental Health Sciences	NA17OAR4320152
Bowling Green State University	NO_0086
NOAA/OAR 'Omics

ODS de las Naciones Unidas

Este resultado contribuye a los siguientes Objetivos de Desarrollo Sostenible

Climate action

Acceder al documento

10.1128/mra.00659-24

Otros archivos y enlaces

View record in Web of Science

Citar esto

Zepernick, B. N., Boegehold, A. G., Kiledal, E. A., Chase, E. E., Hart, L. N., Houghton, K. A., Martin, R. M., Williams, P. A., Johnson, E. C., Schofield, P. K., Cory, R. M., Chaganti, S. R., Godwin, C. M., Spanbauer, T. L., Dick, G. J., Errera, R. M., & Wilhelm, S. W. (2024). Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events. Microbiology Resource Announcements, 13(11). https://doi.org/10.1128/mra.00659-24

@article{cd88024a7cb24e538cdba80bd4395677,

title = "Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events",

abstract = "Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that Microcystis spp. accounted for up to similar to 47\% of the transcriptionally active community.",

keywords = "Climate change, Diatoms, Harmful algal blooms, Phytoplankton, Summer",

author = "Zepernick, \{Brittany N.\} and Boegehold, \{Anna G.\} and Kiledal, \{E. Anders\} and Chase, \{Emily E.\} and Hart, \{Lauren N.\} and Houghton, \{Katelyn A.\} and Martin, \{Robbie M.\} and Williams, \{Paige A.\} and Johnson, \{Emma C.\} and Schofield, \{Paris K.\} and Cory, \{Rose M.\} and Chaganti, \{Subba Rao\} and Godwin, \{Casey M.\} and Spanbauer, \{Trisha L.\} and Dick, \{Gregory J.\} and Errera, \{Reagan M.\} and Wilhelm, \{Steven W.\}",

year = "2024",

month = nov,

day = "12",

doi = "10.1128/mra.00659-24",

language = "English",

volume = "13",

number = "11",

}

Zepernick, BN, Boegehold, AG, Kiledal, EA, Chase, EE, Hart, LN, Houghton, KA, Martin, RM, Williams, PA, Johnson, EC, Schofield, PK, Cory, RM, Chaganti, SR, Godwin, CM, Spanbauer, TL, Dick, GJ, Errera, RM & Wilhelm, SW 2024, 'Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events', Microbiology Resource Announcements, vol. 13, n.º 11. https://doi.org/10.1128/mra.00659-24

TY - JOUR

T1 - Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

AU - Zepernick, Brittany N.

AU - Boegehold, Anna G.

AU - Kiledal, E. Anders

AU - Chase, Emily E.

AU - Hart, Lauren N.

AU - Houghton, Katelyn A.

AU - Martin, Robbie M.

AU - Williams, Paige A.

AU - Johnson, Emma C.

AU - Schofield, Paris K.

AU - Cory, Rose M.

AU - Chaganti, Subba Rao

AU - Godwin, Casey M.

AU - Spanbauer, Trisha L.

AU - Dick, Gregory J.

AU - Errera, Reagan M.

AU - Wilhelm, Steven W.

PY - 2024/11/12

Y1 - 2024/11/12

N2 - Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that Microcystis spp. accounted for up to similar to 47% of the transcriptionally active community.

AB - Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that Microcystis spp. accounted for up to similar to 47% of the transcriptionally active community.

KW - Climate change

KW - Diatoms

KW - Harmful algal blooms

KW - Phytoplankton

KW - Summer

UR - https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=elsevierpure&SrcAuth=WosAPI&KeyUT=WOS:001328734900001&DestLinkType=FullRecord&DestApp=WOS_CPL

U2 - 10.1128/mra.00659-24

DO - 10.1128/mra.00659-24

M3 - Article

C2 - 39365054

SN - 2169-8287

VL - 13

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

IS - 11

ER -

Diel metatranscriptomes capture cyanobacteria-dominated Lake Erie community response to episodic events

Resumen

Financiación

ODS de las Naciones Unidas

Acceder al documento

Otros archivos y enlaces

Huella

Citar esto