Ir directamente a la navegación principal Ir directamente a la búsqueda Ir directamente al contenido principal

Modeling the catalysis of anti-cocaine catalytic antibody: Competing reaction pathways and free energy barriers

Producción científica: Articlerevisión exhaustiva

92 Citas (Scopus)

Resumen

The competing reaction pathways and the corresponding free energy barriers for cocaine hydrolysis catalyzed by an anti-cocaine catalytic antibody, mAb15A10, were studied by using a novel computational strategy based on the binding free energy calculations on the antibody binding with cocaine and transition states. The calculated binding free energies were used to evaluate the free energy barrier shift from the cocaine hydrolysis in water to the antibody-catalyzed cocaine hydrolysis for each reaction pathway. The free energy barriers for the antibody-catalyzed cocaine hydrolysis were predicted to be the corresponding free energy barriers for the cocaine hydrolysis in water plus the calculated free energy barrier shifts. The calculated free energy barrier shift of -6.87 kcal/mol from the dominant reaction pathway of the cocaine benzoyl ester hydrolysis in water to the dominant reaction pathway of the antibody-catalyzed cocaine hydrolysis is in good agreement with the experimentally derived free energy barrier shift of -5.93 kcal/mol. The calculated mutation-caused shifts of the free energy barrier are also reasonably close to the available experimental activity data. The good agreement suggests that the protocol for calculating the free energy barrier shift from the cocaine hydrolysis in water to the antibody-catalyzed cocaine hydrolysis may be used in future rational design of possible high-activity mutants of the antibody as anti-cocaine therapeutics. The general strategy of the free energy barrier shift calculation may also be valuable in studying a variety of chemical reactions catalyzed by other antibodies or proteins through noncovalent bonding interactions with the substrates.

Idioma originalEnglish
Páginas (desde-hasta)5140-5149
Número de páginas10
PublicaciónJournal of the American Chemical Society
Volumen130
N.º15
DOI
EstadoPublished - abr 16 2008

Financiación

FinanciadoresNúmero del financiador
National Institute on Drug AbuseR01DA013930

    ASJC Scopus subject areas

    • Catalysis
    • General Chemistry
    • Biochemistry
    • Colloid and Surface Chemistry

    Huella

    Profundice en los temas de investigación de 'Modeling the catalysis of anti-cocaine catalytic antibody: Competing reaction pathways and free energy barriers'. En conjunto forman una huella única.

    Citar esto